View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_low_104 (Length: 235)
Name: NF20479_low_104
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_104 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9688085 - 9688305
Alignment:
| Q |
1 |
aactgcaataacattactacattagtgccatcaaccttacaaaaaatcatgttttacactcatgcgctaaacacattgaaataaggcatcatttatcctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9688085 |
aactgcaataacattactacattagtgccatcaaccttacaaaaaatcatgttttacactcatgcgctaaacacattgaaataagacatcatttatcctt |
9688184 |
T |
|
| Q |
101 |
aaggatcttgtagaaaagaaggatgtaatctttgaatacattgacaccaagtatgaacttgcccacattttaacaaaaccactagcatccgattcttttc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
9688185 |
aagaatcttgtagaaaagaaggatgtaatctttgaatacattgacaccaagtgtgaacttgcccacatttttacaaaaccactaccatccgattattttc |
9688284 |
T |
|
| Q |
201 |
tcaaaatatgtagggagttag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
9688285 |
tcaaaatatgtagggagttag |
9688305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13554462 - 13554682
Alignment:
| Q |
1 |
aactgcaataacattactacattagtgccatcaaccttacaaaaaatcatgttttacactcatgcgctaaacacattgaaataaggcatcatttatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13554462 |
aactgcaataacattactacattagtgccatcaaccttacaaaaaatcatgttttacactcatgcgctaaacacattgaaataagacatcatttatcctt |
13554561 |
T |
|
| Q |
101 |
aaggatcttgtagaaaagaaggatgtaatctttgaatacattgacaccaagtatgaacttgcccacattttaacaaaaccactagcatccgattcttttc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
13554562 |
aagaatcttgtagaaaagaaggatgtaatctttgaatacattgacaccaagtgtgaacttgcccacatttttacaaaaccactaccatccgattattttc |
13554661 |
T |
|
| Q |
201 |
tcaaaatatgtagggagttag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
13554662 |
tcaaaatatgtagggagttag |
13554682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 14757641 - 14757511
Alignment:
| Q |
75 |
attgaaataaggcatcatttatccttaaggatcttgtagaaaagaaggatgtaatctttgaatacattgacaccaagtatgaacttgcccacattttaac |
174 |
Q |
| |
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|||||||||||||||||||| | ||| || || ||||||||||| |||||||| ||||| || ||||||||||| | | ||||||| | ||||| | |
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| T |
14757641 |
attgaaataaggcatcattttt--ttagggttcacgtagaaaagaatgatgtaatttttgagtatattgacaccaaatgtcaacttgcaaatatttttag |
14757544 |
T |
|
| Q |
175 |
aaaaccactagcatccgattcttttctcaaaat |
207 |
Q |
| |
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|||||||| ||||||| |||||||| ||||| |
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| T |
14757543 |
caaaccacttccatccgactcttttcttaaaat |
14757511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 19392017 - 19391917
Alignment:
| Q |
116 |
aagaaggatgtaatctttgaatacattgacaccaagtatgaacttgcccacattttaacaaaaccactagcatccgattcttttctcaaaatatgtaggg |
215 |
Q |
| |
|
|||||||||||||| ||||| || ||||||| |||| | | ||||| ||||||| | |||||| ||| ||||||||||||| ||||| || ||||||| |
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| T |
19392017 |
aagaaggatgtaatttttgagtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatccgattctttcctcaagatctgtaggg |
19391918 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
|
| |
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|
| T |
19391917 |
a |
19391917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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