View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_107 (Length: 230)

Name: NF20479_low_107
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_107
NF20479_low_107
[»] scaffold0029 (1 HSPs)
scaffold0029 (33-224)||(71024-71215)
[»] chr2 (2 HSPs)
chr2 (33-224)||(7190697-7190888)
chr2 (34-224)||(13809778-13809966)
[»] chr7 (1 HSPs)
chr7 (33-224)||(45087769-45087960)
[»] chr1 (3 HSPs)
chr1 (33-224)||(2939316-2939507)
chr1 (33-224)||(33332534-33332725)
chr1 (34-224)||(46015052-46015241)
[»] chr6 (1 HSPs)
chr6 (34-224)||(17971139-17971327)
[»] chr8 (3 HSPs)
chr8 (52-224)||(9311695-9311867)
chr8 (34-224)||(14817364-14817552)
chr8 (34-224)||(14828187-14828375)
[»] chr4 (2 HSPs)
chr4 (52-224)||(11039251-11039423)
chr4 (135-192)||(41550247-41550304)
[»] chr5 (1 HSPs)
chr5 (52-224)||(19718399-19718572)
[»] chr3 (1 HSPs)
chr3 (34-204)||(39991861-39992028)


Alignment Details
Target: scaffold0029 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 71024 - 71215
Alignment:
Q  33 gctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaaca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  71024 gctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcaaacacaatcctagaaaacaacataaaca 71123  T
Q  133 attttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    || ||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  71124 atattcttcttgtggcaatttttactgtatctagacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcacctcactc 71215  T

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Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 7190888 - 7190697
Alignment:
Q  33 gctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaaca 132  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7190888 gctccaatctgatatccatattcctctatttcactctctaccaaacacaaaattatcatcatcttcgtttcaaacacaatcccagaaaacaacataaaca 7190789  T
Q  133 attttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    |||||||||||| ||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7190788 attttcttcttgcggcaatttttactgtatctgaatttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 7190697  T

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Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 13809778 - 13809966
Alignment:
Q  34 ctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaacaa 133  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||    
T  13809778 ctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacacaatcccagaaaacaacataaacaa 13809875  T
Q  134 ttttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    ||||||||||  |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||    
T  13809876 ttttcttcttagggcaatttttattgtatctggatttttgtttcagatgtttgttcatatgggacaatacttcaacatgttaacctcactc 13809966  T

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Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 45087960 - 45087769
Alignment:
Q  33 gctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaaca 132  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45087960 gctccaatctaatacccatattcctctatttcactctttgccaaacacaaaattatcatcatcttcgtttcaaacacaatcccagaaaacaacataaaca 45087861  T
Q  133 attttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    |||| ||| ||||||||||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  45087860 atttccttgttgtggcaatttttactgtatctggatttttgtttcagatgtttgttcacaagggacaatacttcaacatgttcacctcactc 45087769  T

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Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 2939507 - 2939316
Alignment:
Q  33 gctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaaca 132  Q
    |||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  2939507 gctccaatctgatacctatattcctctatttcactctataccaaacacaaaattatcatcatcttcgttttaaacacaaacccagaaaacaacataaaca 2939408  T
Q  133 attttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    |||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2939407 attttcttcttgtggcaattttgactgtatctggatttttgtttcagatgtttgttcataagggacaatacttcaacatgttcacctcactc 2939316  T

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Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 33332534 - 33332725
Alignment:
Q  33 gctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaaca 132  Q
    |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||    
T  33332534 gctccaatctaatactcatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtgtcaaacacaatcctagaaaacaacataaaca 33332633  T
Q  133 attttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    |||| ||| ||||||||||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  33332634 atttccttgttgtggcaatttttactgtatctggatttttgtttcagatgtttgttcacaagggacaatacttcaacatgttcacctcactc 33332725  T

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Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 46015052 - 46015241
Alignment:
Q  34 ctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaa-caacataaaca 132  Q
    ||||||| ||||||||||  |||| |||||||||||||||||||||||||||||  ||||||||| |||| ||||||||||| ||||| |||||||||||    
T  46015052 ctccaatctgatacccat--tcctatatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacacaatccctgaaaaacaacataaaca 46015149  T
Q  133 attttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||    
T  46015150 attttcttcttggggcaatttttattgtatctggatttttgtttcagatgtttgttcatatgggacaatacttcaacatgttaacctcactc 46015241  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 17971139 - 17971327
Alignment:
Q  34 ctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaacaa 133  Q
    ||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||||| |    
T  17971139 ctccaatctgatacccat--tcctctatttcaccctctgccaaacacaaaattatcatcatcttcgtttaaaaaaaaatcccagaaaacaacataaacga 17971236  T
Q  134 ttttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  17971237 ttttcttcttgtggcaatttttactgtatctggatttttgtttcagatgtttgttcataagggacaatactttaacatgttcacctcactc 17971327  T

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Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 9311867 - 9311695
Alignment:
Q  52 attcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaacaattttcttcttgtggcaat 151  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  9311867 attcctctatttcactctctgccaaacacaaaattacaatcaccttcttttcaaacacaatcccaaaaaacaacataaacaattttcttcttggggcaat 9311768  T
Q  152 ttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  9311767 ttttattgtatctggatttttgtttcagatgtttgttcatatgggataatacttcaacatgttcacctcactc 9311695  T

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Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 14817552 - 14817364
Alignment:
Q  34 ctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaacaa 133  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||  ||||||||| |||| |||| ||||||||||||||||||||||||    
T  14817552 ctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacataatcccagaaaacaacataaacaa 14817455  T
Q  134 ttttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    ||||||||||| || ||||||||||| ||||| | |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  14817454 ttttcttcttggggaaatttttattgtatctgaatttttgtttaagatgtttgttcatatgggacaatacttcaacatgttcacctcactc 14817364  T

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Target: chr8; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 14828187 - 14828375
Alignment:
Q  34 ctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaacaa 133  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||  ||||||||| |||| |||| ||||||||||||||||||||||||    
T  14828187 ctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacataatcccagaaaacaacataaacaa 14828284  T
Q  134 ttttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    ||||||||||| || ||||||||||| ||||| | |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  14828285 ttttcttcttggggaaatttttattgtatctgaatttttgtttaagatgtttgttcatatgggacaatacttcaacatgttcacctcactc 14828375  T

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Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 11039423 - 11039251
Alignment:
Q  52 attcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaacaattttcttcttgtggcaat 151  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  11039423 attcctctatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacacaatcccaaaaaacaacataaataattttcttcttggggcaat 11039324  T
Q  152 ttttattgcatctggacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc 224  Q
    |||||||| || |||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||||    
T  11039323 ttttattgtatatggatttttgtttcagatgtttgttcatatggcacaatacttcaacatgttcacctcactc 11039251  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 41550304 - 41550247
Alignment:
Q  135 tttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcata 192  Q
    |||||||||||  ||||||||| |||||||||| |  ||||||||||| |||||||||    
T  41550304 tttcttcttgtatcaatttttactgcatctggattcgtgtttcagatgattgttcata 41550247  T

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Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 19718572 - 19718399
Alignment:
Q  52 attcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaacaattttcttcttgtggcaat 151  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||   ||||    
T  19718572 attcctctatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacacaatcccaaaaaacaacataaacaattttcttcttggaacaat 19718473  T
Q  152 ttttattgcatctggacttttgtttcagatgtttgttcata-agggacaatacttcaacatgttcatctcactc 224  Q
    |||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  19718472 ttttattgtatctggatttttgtttcagatgtttgttcatatggggacaatacttcaacatgttcacctcactc 19718399  T

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Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 39991861 - 39992028
Alignment:
Q  34 ctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcgaacacaatcccagaaaacaacataaacaa 133  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||  ||||| ||| |||| |||||||||||||||||||||||||||||    
T  39991861 ctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaa 39991957  T
Q  134 ttttcttcttgtggcaatttttattgcatctggacttttgtttcagatgtttgttcataagggacaatact 204  Q
    |||||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||    
T  39991958 ttttcttcttggagcaatttttattgtatctggatttttgtttcagatgtttgttcatatggaacaatact 39992028  T

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