View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_109 (Length: 225)
Name: NF20479_low_109
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_109 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41168981 - 41168758
Alignment:
| Q |
1 |
attatattggattacagatgtaccaggaccaagtgcgtaacatctaaaatgtgccaatgaaaaattaatatcagtcatacctttaagatcctttctaagg |
100 |
Q |
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| T |
41168981 |
attatattggattacagatgtaccaggaccaagtgcataacatctaaaatgtgccaatgaaaaattaatatcagtcatacctttaagatcctttctaagg |
41168882 |
T |
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| Q |
101 |
gaaagaagaggatccagtgtaacatctgacacattccaataaaaatttatattaattagtttgtataaaaatagattaatcttcaataatatgcacagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
41168881 |
gaaagaagaggatccagtgtaacatctgacacattccaataaaaatttatattaattagtttgta-caaaatagattaatcttcaataatatgcacggca |
41168783 |
T |
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| Q |
201 |
taaggggattaaaacctgatgataa |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
41168782 |
taaggggattaaaacctgatgataa |
41168758 |
T |
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