View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_11 (Length: 575)

Name: NF20479_low_11
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_11
NF20479_low_11
[»] chr5 (15 HSPs)
chr5 (21-408)||(17731286-17731673)
chr5 (404-567)||(17717097-17717255)
chr5 (34-230)||(37369281-37369475)
chr5 (34-230)||(41992608-41992801)
chr5 (34-132)||(25739744-25739841)
chr5 (34-122)||(40539429-40539516)
chr5 (67-132)||(34113942-34114008)
chr5 (67-132)||(40941499-40941565)
chr5 (34-133)||(16929440-16929540)
chr5 (34-100)||(33672719-33672784)
chr5 (67-132)||(34091742-34091808)
chr5 (90-147)||(8972728-8972785)
chr5 (113-242)||(35228638-35228765)
chr5 (34-100)||(35228765-35228830)
chr5 (37-119)||(31204949-31205030)
[»] chr7 (17 HSPs)
chr7 (37-356)||(37068200-37068520)
chr7 (34-230)||(46066829-46067023)
chr7 (34-230)||(11591746-11591940)
chr7 (34-230)||(48827107-48827305)
chr7 (74-230)||(43614062-43614219)
chr7 (48-230)||(33516088-33516269)
chr7 (34-122)||(13096286-13096373)
chr7 (37-130)||(46841918-46842010)
chr7 (73-128)||(36828189-36828244)
chr7 (34-100)||(4554004-4554069)
chr7 (34-100)||(4968590-4968655)
chr7 (73-132)||(34500058-34500118)
chr7 (347-433)||(4554301-4554390)
chr7 (113-242)||(4968463-4968590)
chr7 (149-242)||(4554103-4554196)
chr7 (71-132)||(38871376-38871437)
chr7 (92-132)||(37617613-37617653)
[»] chr4 (20 HSPs)
chr4 (29-242)||(11945145-11945359)
chr4 (31-230)||(48236386-48236580)
chr4 (34-230)||(374583-374777)
chr4 (34-230)||(41055110-41055304)
chr4 (34-230)||(55682309-55682503)
chr4 (27-150)||(2469335-2469456)
chr4 (52-230)||(49811947-49812126)
chr4 (34-230)||(7199531-7199725)
chr4 (34-186)||(37517091-37517241)
chr4 (34-186)||(37521307-37521457)
chr4 (34-122)||(11945060-11945147)
chr4 (34-132)||(13763217-13763314)
chr4 (34-122)||(28623742-28623829)
chr4 (34-134)||(29947773-29947872)
chr4 (73-132)||(44420662-44420721)
chr4 (34-111)||(51469778-51469852)
chr4 (34-94)||(39163559-39163618)
chr4 (67-132)||(46203793-46203859)
chr4 (67-101)||(56290550-56290584)
chr4 (256-293)||(11945400-11945437)
[»] chr3 (14 HSPs)
chr3 (34-230)||(53286028-53286225)
chr3 (34-230)||(39759656-39759851)
chr3 (34-230)||(43823107-43823301)
chr3 (67-132)||(26569812-26569878)
chr3 (67-132)||(37494504-37494570)
chr3 (49-131)||(11992904-11992987)
chr3 (34-132)||(32574454-32574551)
chr3 (52-230)||(3069916-3070081)
chr3 (34-100)||(28160972-28161037)
chr3 (34-100)||(48663409-48663474)
chr3 (73-132)||(2993583-2993642)
chr3 (34-100)||(4101117-4101182)
chr3 (67-132)||(9689026-9689092)
chr3 (113-242)||(28160845-28160972)
[»] chr6 (7 HSPs)
chr6 (34-230)||(11843529-11843726)
chr6 (34-230)||(3288133-3288327)
chr6 (34-132)||(5320282-5320379)
chr6 (34-122)||(16502257-16502344)
chr6 (34-132)||(6807490-6807589)
chr6 (67-132)||(8366047-8366113)
chr6 (67-132)||(20771870-20771936)
[»] chr2 (20 HSPs)
chr2 (34-230)||(33458007-33458201)
chr2 (34-132)||(1274684-1274779)
chr2 (77-230)||(34478619-34478773)
chr2 (34-293)||(2948605-2948858)
chr2 (34-230)||(21473034-21473231)
chr2 (37-132)||(3221492-3221586)
chr2 (69-132)||(29395495-29395559)
chr2 (34-100)||(1659238-1659303)
chr2 (67-132)||(6892867-6892933)
chr2 (67-132)||(3216659-3216725)
chr2 (67-132)||(18025734-18025800)
chr2 (67-102)||(25342150-25342185)
chr2 (67-102)||(25346633-25346668)
chr2 (34-100)||(17105854-17105919)
chr2 (470-557)||(2948231-2948318)
chr2 (73-132)||(8149125-8149184)
chr2 (73-132)||(8153749-8153808)
chr2 (34-81)||(38433000-38433046)
chr2 (71-132)||(24836300-24836364)
chr2 (76-145)||(234623-234692)
[»] chr1 (23 HSPs)
chr1 (34-132)||(23362643-23362739)
chr1 (34-153)||(3967068-3967191)
chr1 (34-230)||(52004469-52004663)
chr1 (34-230)||(52539591-52539788)
chr1 (22-147)||(20993605-20993727)
chr1 (34-150)||(42871931-42872045)
chr1 (34-132)||(126120-126217)
chr1 (34-122)||(3967792-3967879)
chr1 (35-111)||(41012764-41012839)
chr1 (71-146)||(51376940-51377018)
chr1 (73-131)||(8114512-8114570)
chr1 (73-132)||(3170394-3170453)
chr1 (67-146)||(28198347-28198426)
chr1 (34-100)||(24196195-24196260)
chr1 (34-100)||(24766324-24766389)
chr1 (36-100)||(8340870-8340933)
chr1 (347-433)||(20009889-20009978)
chr1 (34-100)||(20009588-20009653)
chr1 (347-424)||(24195875-24195955)
chr1 (34-242)||(47974506-47974698)
chr1 (113-242)||(24766197-24766324)
chr1 (34-132)||(36393104-36393201)
chr1 (75-145)||(52398406-52398476)
[»] scaffold0368 (1 HSPs)
scaffold0368 (34-150)||(8543-8657)
[»] scaffold0119 (1 HSPs)
scaffold0119 (34-132)||(26312-26407)
[»] chr8 (11 HSPs)
chr8 (34-145)||(38567725-38567833)
chr8 (34-122)||(12524886-12524973)
chr8 (34-132)||(35449053-35449151)
chr8 (34-100)||(10290373-10290438)
chr8 (67-132)||(23004021-23004087)
chr8 (34-100)||(43265385-43265450)
chr8 (34-111)||(26278625-26278701)
chr8 (67-102)||(1089926-1089961)
chr8 (347-433)||(43265682-43265771)
chr8 (50-133)||(18952585-18952670)
chr8 (52-100)||(774144-774192)
[»] scaffold0004 (1 HSPs)
scaffold0004 (71-132)||(35689-35751)
[»] scaffold0044 (1 HSPs)
scaffold0044 (73-132)||(83725-83785)
[»] scaffold0311 (1 HSPs)
scaffold0311 (72-132)||(1391-1451)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 21 - 408
Target Start/End: Complemental strand, 17731673 - 17731286
Alignment:
Q  21 tcacgaacattagtatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataa 120  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  17731673 tcacggacattagtatatttaatactaaaaatactataccgttgagaaagaaatactaaaatatcttaaacattactcaaaagtcatgaagcattcataa 17731574  T
Q  121 tttgaaataaaaaccacaagtcttaagcaacattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagttta 220  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  17731573 tttgaaataaaaaccacaagtcttaagtaacattaaaacatgcttgcaaacaataccaataaaatttaaggcaaacaagactttaagcctctaaagctta 17731474  T
Q  221 gagtaacaaaggttctaaacatcaaaactcaaataaaaagttcaagaatcatgaaaatcttcataatcacttcttccaccactatagtgatccatgtact 320  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  17731473 gagtaacaaagatactaaacatcaaaactcaaataaaaagttcaagaatcatgaaaatcttcatcatcatttcttccaccactatagtgatccatgtact 17731374  T
Q  321 cttctttgtcctctttctcttcaatctcatcctctttttcttcatccttccaattaacaaactccgggtcatattcatcaatttctac 408  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  17731373 cttctttgtcctctttctcttcaatctcatcctcttttttttcatccttccaattaccaaactctgggtcatattcatcaatttctac 17731286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 404 - 567
Target Start/End: Complemental strand, 17717255 - 17717097
Alignment:
Q  404 tctaccactttctttgcttttgccttagaacatgaacatttaggccgtgacggaggttgcttgaactatgggctcagcagcaccacttgctacttgaaca 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     |    
T  17717255 tctaccactttctttgcttttgccttagaacatgaacatttaggccgagacggaggttgcttgaactatgggctcagcagcaccacttgctact-----a 17717161  T
Q  504 tctagccaaccaaactcatcattatcatagacaacatcaacttgacctacacgatattcatctc 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17717160 tctagccaaccaaactcatcattatcatagacaacatcaacttgacctacacaatattcatctc 17717097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 37369281 - 37369475
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| ||||||||| || | |||  | |||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||||     
T  37369281 tatatttaatattaaaa-tactatactattaaaaaa--attactaaaataccttaaacattacttaaaattcatgaagtattcctaatttgaaataaaat 37369377  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||||||||| |  || |||||  ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  37369378 tcacaagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 37369475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 41992801 - 41992608
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| ||||||||||||   ||| |||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  41992801 tatatttaatattaaaa-tactatactgtt---aaaaaaatactaaaattccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 41992706  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||| ||||| |  || |||||  ||||||| ||||| ||||||| | || | || | | |||||| |||||||||| ||| |||||||||    
T  41992705 tcacaagtcttgagcaaaacataaaacatatttgcaaaaaatactaataaaagtcaaggaaaccgacactttacgcctctaaagcttaaagtaacaaa 41992608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 25739744 - 25739841
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| ||| ||||||| |||| | | ||||||||||||||||||||    
T  25739744 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattgctcaaaattcataatgtattcataatttgaaataaaa 25739841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 40539429 - 40539516
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatt 122  Q
    |||||||||||||||||  || ||| |||| | ||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  40539429 tatatttaatactaaaag-accatattgttcaaaaagatatactaaaataccttaaacattacttaaaattcatgaagtattcataatt 40539516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 34114008 - 34113942
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||||||||  |||||| | ||||||||| ||||||||||    
T  34114008 aaagaaatactaaaataccttaaacattactcaaaatttcatgatgtattcataatatgaaataaaa 34113942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 40941499 - 40941565
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||| ||||||||| ||||||||||    
T  40941499 aaagaaatactaaaataccttaaacattactcaaaatttcattaagtattcataatatgaaataaaa 40941565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 16929440 - 16929540
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgag--aaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaa 131  Q
    ||||||||||||||||| ||||||| ||||||   ||| ||||||||||| | |||||| ||||||||||| |||| | | |||||| ||||||||||||    
T  16929440 tatatttaatactaaaa-tactataatgttgaagaaaaaaaatactaaaacaacttaaatattactcaaaattcataatgtattcatgatttgaaataaa 16929538  T
Q  132 aa 133  Q
    ||    
T  16929539 aa 16929540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 33672784 - 33672719
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  33672784 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 33672719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 34091742 - 34091808
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaa-aatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||| |||   |||||||| ||||||||| ||||||||||    
T  34091742 aaagaaatactaaaataccttaaacattacttaaatgttcatgaagtattcataatatgaaataaaa 34091808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 8972728 - 8972785
Alignment:
Q  90 acattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtcttaag 147  Q
    |||||||| |||| ||||||||  |||||||||||||||||||  |||||||||||||    
T  8972728 acattactaaaaactcatgaagtgttcataatttgaaataaaaggcacaagtcttaag 8972785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 35228765 - 35228638
Alignment:
Q  113 attcataatttgaaataaaaaccacaagtcttaagcaa--cattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcct 210  Q
    ||||||||||||||||||||    || |||||| ||||  ||| ||||||| |||||||  ||||| ||||||||| || | |   || |||||||||||    
T  35228765 attcataatttgaaataaaa----catgtcttaggcaaaacataagaacatacttgcaagaaatactaataaaattcaaggtagtaaacactttaagcct 35228670  T
Q  211 ctaaagtttagagtaacaaaggttctaaacat 242  Q
    |||||| ||| ||||||||| || ||||||||    
T  35228669 ctaaagcttaaagtaacaaaagtactaaacat 35228638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 35228830 - 35228765
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| || |||| |||||| ||||||||||||||| | |||||  |||||||||    
T  35228830 tatatttaatactaaaa-taatataatgttgaaaaagaaatactaaaacaacttaagtattactcaa 35228765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 31204949 - 31205030
Alignment:
Q  37 atttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcata 119  Q
    |||||||||||||  ||| ||||| || | |||||||| | ||||||||||||| |||||||||||  |||||||| |||||||    
T  31204949 atttaatactaaa--taccatactattcaaaaagaaatgcaaaaataccttaaatattactcaaaatttcatgaagtattcata 31205030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 37 - 356
Target Start/End: Complemental strand, 37068520 - 37068200
Alignment:
Q  37 atttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaacca 136  Q
    |||| |||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  37068520 attttatactaaaaatactataccgttaagatagacatactaaaataccttaaacattaatcaaaaatcatgaagtattcataatttgaaataaaaacca 37068421  T
Q  137 caagtcttaagcaacattag-aacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaaggttc 235  Q
     |||||||||||||||| || ||||||||||||||||||||||| |||||| || | || || |||||||||  | ||||| ||| ||||| ||| || |    
T  37068420 taagtcttaagcaacataagaaacatgcttgcaaacaataccaaaaaaattcaaggaaagcaggactttaagtatgtaaagcttaaagtaaaaaaagtgc 37068321  T
Q  236 taaacatcaaaactcaaataaaaagttcaagaatcatgaaaatcttcataatcacttcttccaccactatagtgatccatgtactcttctttgtcctctt 335  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| ||| |||| |||||||||| |||| | ||  | ||||||||  |||||||    
T  37068320 taaacatcaaaagtcaaataaaaagttcaataatcatgaaaatcttcatcatcgcttcctccaccactagagtggtgcacatgctcttcttcatcctctt 37068221  T
Q  336 tctcttcaatctcatcctctt 356  Q
    ||||||||| ||| |||||||    
T  37068220 tctcttcaaactcttcctctt 37068200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 46066829 - 46067023
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  46066829 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 46066925  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||||||||| |  || |||||  ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  46066926 tcacaagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 46067023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 11591940 - 11591746
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  11591940 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 11591844  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     || ||||||||||||| |  || |||||  ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  11591843 tcataagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 11591746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 48827305 - 48827107
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgaga---aagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataa 130  Q
    ||||||||||| ||||| |||| ||||||||| |   || ||| |||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||    
T  48827305 tatatttaatattaaaa-tactgtactgttgaaagaaaaaaaaaactaaaataccttaaacattactcaaaattcattaagtattcctaatttgaaataa 48827207  T
Q  131 aaaccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaa 229  Q
    ||  |||||||||||||||| |  || ||||| |||||||| ||||| ||||||||| || | || ||| | ||||| ||||||||| ||| ||||||||    
T  48827206 aagtcacaagtcttaagcaaaacataaaacatacttgcaaaaaatactaataaaattcaaggaaaccaacattttaa-cctctaaagcttaaagtaacaa 48827108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 43614219 - 43614062
Alignment:
Q  74 tactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtcttaagcaaca-ttagaacatgcttgcaaaca 172  Q
    ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||  |||||||||||||||| |  || |||||  ||||||| |    
T  43614219 tactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaagtcacaagtcttaagcaaaacataaaacatatttgcaaaaa 43614120  T
Q  173 ataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
    |||| ||||||||| || | ||   | ||||||||||||||||  ||| |||||||||    
T  43614119 atactaataaaattcaaggaaactgacactttaagcctctaaaacttaaagtaacaaa 43614062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 48 - 230
Target Start/End: Original strand, 33516088 - 33516269
Alignment:
Q  48 aaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtcttaag 147  Q
    |||||||||||||||| | |||  | |||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||||  |||||||||||||    
T  33516088 aaaatactatactgttaaaaaa--attactaaaataccttaaacatcactcaaaattcatgaagtattcctaatttgaaataaaagtcacaagtcttaag 33516185  T
Q  148 caaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
    ||| |  || |||||  ||||||| ||||| |||| |||| || | || | | ||||||||||||||||| | | |||||||||    
T  33516186 caaaacataaaacatatttgcaaaaaatactaatagaattcaaggaaaccgacactttaagcctctaaagctaaaagtaacaaa 33516269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 13096373 - 13096286
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatt 122  Q
    ||||||||||||||||| ||| ||| |||| | |||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||    
T  13096373 tatatttaatactaaaa-taccatattgttcaaaaagaaatactaaaataccttaaacaatacttaaaattcatgaagtattcataatt 13096286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 46842010 - 46841918
Alignment:
Q  37 atttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataa 130  Q
    |||||||||||||  ||| ||||| || | ||||||||||||||||||||||||||||||||||||  |||||||| |||| |||| ||||||||    
T  46842010 atttaatactaaa--taccatactattaaaaaagaaatactaaaataccttaaacattactcaaaatttcatgaagtattcgtaatatgaaataa 46841918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 36828189 - 36828244
Alignment:
Q  73 atactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaat 128  Q
    |||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||    
T  36828189 atactaaaataccttaaatattactcaaaatttatgaagtattcataatttgaaat 36828244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 4554004 - 4554069
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  4554004 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 4554069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 4968655 - 4968590
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  4968655 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 4968590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 34500058 - 34500118
Alignment:
Q  73 atactaaaataccttaaac-attactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||  ||||||||||| | |||||| ||||||||||||||||||||    
T  34500058 atactaaaataccttaaattattactcaaaatttatgaagtattcataatttgaaataaaa 34500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 433
Target Start/End: Original strand, 4554301 - 4554390
Alignment:
Q  347 tcatcctctttttcttcatccttccaat---taacaaactccgggtcatattcatcaatttctaccactttctttgcttttgccttagaa 433  Q
    |||||||||||||||||||||  |||||   |||||||||| |  |||||||| |||| | |||||||||||||| ||||| | ||||||    
T  4554301 tcatcctctttttcttcatccccccaatcagtaacaaactcagaatcatattcgtcaactactaccactttctttccttttcctttagaa 4554390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 4968590 - 4968463
Alignment:
Q  113 attcataatttgaaataaaaaccacaagtcttaagcaa--cattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcct 210  Q
    ||||||||||||||||||||    || |||||| ||||  ||| ||||||| |||||||  ||||| ||||||||| || | |   || |||||||||||    
T  4968590 attcataatttgaaataaaa----catgtcttaggcaaaacataagaacatacttgcaagaaatactaataaaattcaaggtagcaaacactttaagcct 4968495  T
Q  211 ctaaagtttagagtaacaaaggttctaaacat 242  Q
    |||||| ||| ||||||||| || ||||||||    
T  4968494 ctaaagcttaaagtaacaaaagtactaaacat 4968463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 4554103 - 4554196
Alignment:
Q  149 aacattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaaggttctaaacat 242  Q
    ||||| ||||||| |||||||  ||||| ||||||||| || | |   || ||||||||||||||||| ||| ||||||||| || ||||||||    
T  4554103 aacataagaacatacttgcaagaaatactaataaaattcaaggtagcaaacactttaagcctctaaagcttaaagtaacaaaagtactaaacat 4554196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 38871376 - 38871437
Alignment:
Q  71 aaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| | |||||| ||||||||||| |||| | | |||||| |||||||||||||    
T  38871376 aaatactaaaacaacttaaatattactcaaaattcataatgtattcatgatttgaaataaaa 38871437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 37617653 - 37617613
Alignment:
Q  92 attactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  37617653 attactcaaaatttatgaagtattcataatttgaaataaaa 37617613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 29 - 242
Target Start/End: Original strand, 11945145 - 11945359
Alignment:
Q  29 attagtatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaat 128  Q
    |||| ||||||||||| ||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||    
T  11945145 attaatatatttaatattaaaa-tactatactgttcaaaaacaaatactaaaataccttaaacattactcaaaattcatgaagtattcataattcgaaat 11945243  T
Q  129 aaaaaccacaagtcttaagc--aacattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaa 226  Q
    |||| ||||||||| |||||  ||||| ||||||| |||||||| ||||| ||||||||| || | || ||| ||||||||||||||||| ||| |||||    
T  11945244 aaaagccacaagtcctaagcaaaacataagaacatacttgcaaaaaatacaaataaaattcaaggaaaccaacactttaagcctctaaagcttaaagtaa 11945343  T
Q  227 caaaggttctaaacat 242  Q
    |||| || ||||||||    
T  11945344 caaaagtactaaacat 11945359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 48236580 - 48236386
Alignment:
Q  31 tagtatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataa 130  Q
    |||||||||||||| ||||| |||| ||||||||| |||  ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||   ||    
T  48236580 tagtatatttaatattaaaa-tactgtactgttgaaaaa--aatactaaaataccttaaacattactcaaaattcatgaagtattcctaatttga---aa 48236487  T
Q  131 aaaccacaagtcttaagcaacat-tagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaa 229  Q
    ||  ||||||| |||||||| || || ||||| |||||||| ||||| ||||||||| || | || ||| ||||||||||||||||| ||| ||||||||    
T  48236486 aagtcacaagttttaagcaaaatataaaacatacttgcaaaaaatactaataaaattcaaggaaaccaacactttaagcctctaaagcttaaagtaacaa 48236387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 374583 - 374777
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||| |||||||||  ||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  374583 tatatttaatattaaaa-tactatacagttgagaaa--aatactaaaattccttaaacattactcaaaattcatgaagtattcttaatttgaaataaaag 374679  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||| ||||||||| |  || ||||| |||||||| ||||| ||||||| | || | || | | ||||||||||||||||| ||| |||||||||    
T  374680 tcacaagccttaagcaaaacataaaacatacttgcaaaaaatactaataaaactcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 374777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 41055110 - 41055304
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  41055110 tatatttaatattaaaa-tactatactgttcaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 41055206  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||||||||| |  || |||||  ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  41055207 tcacaagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 41055304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 55682503 - 55682309
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  55682503 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 55682407  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
      ||||||||||||||| |  || |||||  ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  55682406 ttacaagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 55682309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 2469456 - 2469335
Alignment:
Q  27 acattagtatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaa 126  Q
    |||||| ||||||||||| ||||| ||||||||| |||| ||| ||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||    
T  2469456 acattaatatatttaatattaaaa-tactatactattga-aaataaatactaaaatatcttaaacattactcaaaattcatgaagtattcctaatttgaa 2469359  T
Q  127 ataaaaaccacaagtcttaagcaa 150  Q
    ||||||  ||||||||||||||||    
T  2469358 ataaaagtcacaagtcttaagcaa 2469335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 52 - 230
Target Start/End: Complemental strand, 49812126 - 49811947
Alignment:
Q  52 tactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtcttaagcaac 151  Q
    ||||||||| ||| |||| ||||||||||||| |||||||||||||||||| |||||||| | || |||||||||||||||  || ||||||| |||||     
T  49812126 tactatactattgggaaaaaaatactaaaataacttaaacattactcaaaattcatgaagtactcctaatttgaaataaaagtcagaagtcttgagcaaa 49812027  T
Q  152 a-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
    |  || ||||| |||||||| ||||| ||||||| | || | || ||| ||||||||||||||||| | | |||||||||    
T  49812026 acataaaacatacttgcaaaaaatactaataaaactcaaggaaaccaacactttaagcctctaaagctaaaagtaacaaa 49811947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 7199725 - 7199531
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| ||||||||||||   ||| || |||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  7199725 tatatttaatattaaaa-tactatactgtt--aaaaaaattact-aaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 7199630  T
Q  134 ccacaagtcttaagcaaca--ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||||||||| |   || |||||  ||||||| | ||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  7199629 tcacaagtcttaagcaaaaacataaaacatatttgcaaaaagtactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 7199531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 37517091 - 37517241
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||     
T  37517091 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttaaaataaaag 37517187  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatt 186  Q
     |||||||||||||||| |  || |||||  ||||||| ||||| |||||||||    
T  37517188 tcacaagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaatt 37517241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 37521307 - 37521457
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||     
T  37521307 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttaaaataaaag 37521403  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatt 186  Q
     |||||||||||||||| |  || |||||  ||||||| ||||| |||||||||    
T  37521404 tcacaagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaatt 37521457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 11945060 - 11945147
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatt 122  Q
    ||||||||||| ||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  11945060 tatatttaatattaaaa-tactatactgttcaaaaacaaatactaaaataccttaaacattactcaaaattcatgaagtattcataatt 11945147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 13763314 - 13763217
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||| ||||||| || ||| ||||||||||||||| | |||||| ||||||||||| |||| | | ||||||||||||||||||||    
T  13763314 tatatttaatactaaaa-tactataatggtgaaaaagaaatactaaaacaacttaaatattactcaaaattcataatgtattcataatttgaaataaaa 13763217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 28623742 - 28623829
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatt 122  Q
    |||||||||||||||||  || ||| |||| | ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  28623742 tatatttaatactaaaag-accatattgttcaaaaagaaatactaaaataccttaaacattacttaaaattcatgaagtattcataatt 28623829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 29947872 - 29947773
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||||||||| ||||||| |||||| ||| ||||||||||| | |||||| ||||||||||| |||| | | |||||| ||||||||||||||    
T  29947872 tatatttaatactaaaa-tactataatgttgaaaaaaaaatactaaaacaacttaaatattactcaaaattcataatgtattcatgatttgaaataaaaa 29947774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 44420662 - 44420721
Alignment:
Q  73 atactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  44420662 atactaaaataccttaaatattactcaaaatttatgaagtattcataatttgaaataaaa 44420721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 51469778 - 51469852
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaag 111  Q
    ||||||||||| ||||| |||||||||||| | |||  ||||||||||| ||||||||||||||||||| ||||||||    
T  51469778 tatatttaatattaaaa-tactatactgttaaaaaa--aatactaaaattccttaaacattactcaaaattcatgaag 51469852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 39163559 - 39163618
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacatt 94  Q
    ||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||||||||    
T  39163559 tatatttaatattaaaa-tattatactgttgaaaaataaatactaaaataccttaaacatt 39163618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 46203859 - 46203793
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaaat-catgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||| ||||||| |||||||||| | ||||||| |||||| || ||||||||||    
T  46203859 aaagaaatactaaaataacttaaacgttactcaaaattacatgaagtattcatcatatgaaataaaa 46203793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 56290584 - 56290550
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaa 101  Q
    ||||||||||||||||||||||||||| |||||||    
T  56290584 aaagaaatactaaaataccttaaacatgactcaaa 56290550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 11945400 - 11945437
Alignment:
Q  256 aaaagttcaagaatcatgaaaatcttcataatcacttc 293  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  11945400 aaaagttcaaaaatcatgaaaatcttcatcatcacttc 11945437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 53286028 - 53286225
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaa-tactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||    
T  53286028 tatatttaatattaaaa-tactttactgttgaaaaaaaaaatactaaaataccttaaacattactcaaaattcattaagtattcttaatttgaaataaaa 53286126  T
Q  133 accacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
    | |||||||||||||||| |  || ||||| |||||||| ||||| ||||||||| || | || ||| ||||||||||||||||| ||| |||||||||    
T  53286127 atcacaagtcttaagcaaaacataaaacatacttgcaaaaaatactaataaaattcaaggaaaccaacactttaagcctctaaagcttaaagtaacaaa 53286225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 39759851 - 39759656
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | ||| || ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  39759851 tatatttaatattaaaa-tactatactgttaaaaaa-aattactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 39759754  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||||||||| |  || |||||| ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  39759753 tcacaagtcttaagcaaaacataaaacatgtttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 39759656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 43823107 - 43823301
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  43823107 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 43823203  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||||||||| |  || |||||  ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  43823204 tcacaagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 43823301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 26569878 - 26569812
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||||||    
T  26569878 aaagaaatactaaaataccttaaacattactcaaaatttcatgaagtattcataatatgaaataaaa 26569812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 37494504 - 37494570
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||||||    
T  37494504 aaagaaatactaaaataccttaaacattactcaaaatttcatgaagtattcataatatgaaataaaa 37494570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 11992904 - 11992987
Alignment:
Q  49 aaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaa 131  Q
    |||||| ||||| || | ||||||||||||||||||||||||||||||||||||  || ||||| ||||||||| |||||||||    
T  11992904 aaataccatactattcaaaaagaaatactaaaataccttaaacattactcaaaatttcttgaagtattcataatatgaaataaa 11992987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 32574454 - 32574551
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| ||||| |||| || |||||| |||||||| |||||| |||||||| |||||| |||| |||| | | ||||||||||||||||||||    
T  32574454 tatatttaatattaaaa-tactgtaatgttgaaaaagaaatgctaaaacaccttaaaaattacttaaaagtcataatgtattcataatttgaaataaaa 32574551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 52 - 230
Target Start/End: Original strand, 3069916 - 3070081
Alignment:
Q  52 tactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtcttaagc--a 149  Q
    ||||||| |||||| ||||||||||||||||| |||||| ||||||||||           |||||||||||||||||||    ||| |||||| ||  |    
T  3069916 tactataatgttgaaaaagaaatactaaaataacttaaatattactcaaa-----------attcataatttgaaataaa----acatgtcttatgcaaa 3070000  T
Q  150 acattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
    |||| ||||||| |||||||  ||||| ||||||||| || | |  ||| ||||||||||||||||| ||| |||||||||    
T  3070001 acataagaacatacttgcaataaatactaataaaattcaaggtagccaacactttaagcctctaaagcttaaagtaacaaa 3070081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 28161037 - 28160972
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  28161037 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 28160972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 48663409 - 48663474
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  48663409 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 48663474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 2993583 - 2993642
Alignment:
Q  73 atactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||||||||||| ||||||||||  | |||||| |||||| |||||||||||||    
T  2993583 atactaaaataccttaaatattactcaaattttatgaagtattcatgatttgaaataaaa 2993642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 4101182 - 4101117
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    |||||||||||||| || ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  4101182 tatatttaatactagaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 4101117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 9689026 - 9689092
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||  |||||||||||| ||||||||||||  |||||||| ||||||||| ||||||||||    
T  9689026 aaagaaatagcaaaataccttaatcattactcaaaatttcatgaagtattcataatatgaaataaaa 9689092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 28160972 - 28160845
Alignment:
Q  113 attcataatttgaaataaaaaccacaagtcttaagcaa--cattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcct 210  Q
    ||||||||||||||||||||    || |||||| ||||  ||| ||||||| |||||||  ||||| ||||||||| || | |   || |||||||||||    
T  28160972 attcataatttgaaataaaa----catgtcttaggcaaaacataagaacatacttgcaagaaatactaataaaattcaaggtagcaaacactttaagcct 28160877  T
Q  211 ctaaagtttagagtaacaaaggttctaaacat 242  Q
    |||||| ||| ||||||||| || ||||||||    
T  28160876 ctaaagcttaaagtaacaaaagtactaaacat 28160845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 11843726 - 11843529
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaa-tactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||    
T  11843726 tatatttaatattaaaa-tactttactgttgaaaaaaaaaatactaaaataccttaaacattactcaaaattcattaagtattcttaatttgaaataaaa 11843628  T
Q  133 accacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
      |||||||||||||||| |  || ||||| |||||||| ||||| ||||||||| || | || ||| ||||||||||||||||| ||| |||||||||    
T  11843627 ttcacaagtcttaagcaaaacataaaacatacttgcaaaaaatactaataaaattcaaggaaaccaacactttaagcctctaaagcttaaagtaacaaa 11843529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 3288133 - 3288327
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| |||||||||||||||||| | |||  | |||||| |||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  3288133 tatatttaata-taaaaatactatactgttaaaaaa--attactaagataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 3288229  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||| ||||| |  || |||||  ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  3288230 tcacaagtcttgagcaaaacataaaacatatttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 3288327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 5320379 - 5320282
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | ||||||  |||||||||| |||| | | || |||||||||||||||||    
T  5320379 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatgttactcaaaattcataatgtatacataatttgaaataaaa 5320282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 16502257 - 16502344
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatt 122  Q
    ||||||||||||||||| ||| ||| |||| | |||||||||||||||||||||||||| |||| |||| |||||| | ||||||||||    
T  16502257 tatatttaatactaaaa-taccatattgttcaaaaagaaatactaaaataccttaaacaatacttaaaattcatgaggtattcataatt 16502344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 6807589 - 6807490
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgaga--aagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaa 131  Q
    ||||||||||||||||| ||||||| ||||||||  || ||||||||||| | |||||| ||||||||||| |||| | | |||||| ||||||||||||    
T  6807589 tatatttaatactaaaa-tactataatgttgagagaaaaaaatactaaaacaacttaaatattactcaaaattcataatgtattcatgatttgaaataaa 6807491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 8366047 - 8366113
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaa-aatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||| |||   |||||| | ||||||||| ||||||||||    
T  8366047 aaagaaatactaaaataccttaaacattacttaaattttcatgatgtattcataatatgaaataaaa 8366113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 20771936 - 20771870
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||  ||||||||||  ||||||||  |||||||| ||||||||||    
T  20771936 aaagaaatactaaaataccttaaatgttactcaaaatttcatgaagttttcataatatgaaataaaa 20771870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 33458007 - 33458201
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  33458007 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 33458103  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||||||||| |  || |||||  ||||||| ||||| ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  33458104 tcacaagtcttaagcaaaacataaaacatatttgcaaaaaatactaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 33458201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 1274684 - 1274779
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  1274684 tatattttatactaaaaatactacactgttgagatagaaatactaaaata-cttaaa-attaatcaaaaatc-tgaagcattcataatttgaaataaaa 1274779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 34478619 - 34478773
Alignment:
Q  77 taaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtcttaagcaaca-ttagaacatgcttgcaaacaata 175  Q
    |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||  || ||||||| ||||| |  || |||||  ||||||| ||||    
T  34478619 taaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaagtcataagtcttgagcaaaacataaaacatatttgcaaaaaata 34478718  T
Q  176 ccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
    | ||||||||| || | || | | ||||||||||||||||| ||| |||||||||    
T  34478719 ctaataaaattcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 34478773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 293
Target Start/End: Complemental strand, 2948858 - 2948605
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||||||||| ||||||| |||||| ||| ||||||||||| | |||||| |||| |||||| |||| | | |||||||||||||||||||      
T  2948858 tatatttaatactaaaa-tactataatgttgaaaaataaatactaaaacatcttaaatattattcaaaattcataatgtattcataatttgaaataaa-- 2948762  T
Q  134 ccacaagtcttaagc--aacattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaag 231  Q
      ||| |||||||||  || || ||||||| || ||||  ||||| ||||||||| || | |  ||| | ||||||||||||||| ||| |||||||||     
T  2948761 --acatgtcttaagcaaaatataagaacatactagcaagaaatactaataaaattcaaggtagccaaca-tttaagcctctaaagcttaaagtaacaaaa 2948665  T
Q  232 gttctaaacatcaaaactcaaataaaaagttcaagaatcatgaaaatcttcataatcacttc 293  Q
    || |||||||| |||  | |||    || ||||| |||||||||||||||||| ||||||||    
T  2948664 gtactaaacatgaaa--taaaagttcaaattcaataatcatgaaaatcttcattatcacttc 2948605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 21473231 - 21473034
Alignment:
Q  34 tatatttaatactaaaaatactatactgttg-agaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| ||||| ||||||| ||||| | ||| ||||||||||||||| | |||||||||||||| |||||||| |||| |||| ||||||||||    
T  21473231 tatatttaatattaaaa-tactatattgttggaaaaaaaaatactaaaataccattaacattactcaaaattcatgaagtattcctaatctgaaataaaa 21473133  T
Q  133 accacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
      |||    || |||||| |  || ||||| || ||||| ||||| || |||||| || | || ||| ||||||||||||||||| ||| |||||||||    
T  21473132 gtcactttactaaagcaaaacataaaacatactcgcaaaaaatactaaaaaaattcaaggaaaccaacactttaagcctctaaagcttaaagtaacaaa 21473034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 3221492 - 3221586
Alignment:
Q  37 atttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaa-aatcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||||||  ||| ||||| || | |||||||||||||||||||||||||||||||||||   |||||||| ||||||||| ||||||||||    
T  3221492 atttaatactaaa--taccatactattcaaaaagaaatactaaaataccttaaacattactcaaagtttcatgaagtattcataatatgaaataaaa 3221586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 29395495 - 29395559
Alignment:
Q  69 agaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||||||    
T  29395495 agaaatactaaaataccttaaacattactcaaaatttcatgaagtattcataatatgaaataaaa 29395559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 1659303 - 1659238
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||| |||||||||    
T  1659303 tatatttaatactaaaa-tactatactgttgaaaaagaaatactaaaacaacttaaatattactcaa 1659238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 6892933 - 6892867
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| |||||| || ||||||||||    
T  6892933 aaagaaatactaaaataccttaaacattactcaaaatttcatgaagtattcatcatatgaaataaaa 6892867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 3216725 - 3216659
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaa-aatcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||| ||||||||||||||||||||||||   |||||||| ||||||||| ||||||||||    
T  3216725 aaagaaataccaaaataccttaaacattactcaaagtttcatgaagtattcataatatgaaataaaa 3216659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 18025734 - 18025800
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||| ||| ||||| ||||||||||    
T  18025734 aaagaaatactaaaataccttaagcattactcaaaatttcatgaagtatttataatatgaaataaaa 18025800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 25342150 - 25342185
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa 102  Q
    ||||||||||||||||||||||||||||||||||||    
T  25342150 aaagaaatactaaaataccttaaacattactcaaaa 25342185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 25346633 - 25346668
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa 102  Q
    ||||||||||||||||||||||||||||||||||||    
T  25346633 aaagaaatactaaaataccttaaacattactcaaaa 25346668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 17105919 - 17105854
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    |||||||||| |||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  17105919 tatatttaatgctaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 17105854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 557
Target Start/End: Complemental strand, 2948318 - 2948231
Alignment:
Q  470 tatgggctcagcagcaccacttgctacttgaacatctagccaaccaaactcatcattatcatagacaacatcaacttgacctacacga 557  Q
    ||||||||| ||||||||||| ||  ||| |||||||||| |||| || ||||||| |||||| ||||| |||  ||||||| |||||    
T  2948318 tatgggctcggcagcaccactcgcctcttcaacatctagcaaacctaaatcatcatcatcataaacaacctcactttgaccttcacga 2948231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 8149184 - 8149125
Alignment:
Q  73 atactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||||||||||| |||| |||||  | |||||| |||||| |||||||||||||    
T  8149184 atactaaaataccttaaatattaatcaaattttatgaagtattcatgatttgaaataaaa 8149125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 8153808 - 8153749
Alignment:
Q  73 atactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||||||||||| |||| |||||  | |||||| |||||| |||||||||||||    
T  8153808 atactaaaataccttaaatattaatcaaattttatgaagtattcatgatttgaaataaaa 8153749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 38433046 - 38433000
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaa 81  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  38433046 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaa 38433000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 24836364 - 24836300
Alignment:
Q  71 aaatactaaaataccttaaacatta---ctcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||| |||||||||||||| ||||   ||||||| | |||||| ||||||||||||||||||||    
T  24836364 aaatattaaaataccttaaatattattactcaaaatttatgaagtattcataatttgaaataaaa 24836300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 234623 - 234692
Alignment:
Q  76 ctaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtctta 145  Q
    ||||||||||||| | ||||||  ||| | ||| || || ||||||||||||||||| ||||||||||||    
T  234623 ctaaaataccttacatattactttaaatttatgtagtatccataatttgaaataaaagccacaagtctta 234692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 23362643 - 23362739
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  23362643 tatattttatactaaaaatactatactgttgagatagaaatactaaaataccttaaa-attaatcaaaaatc-tgaagcattcataatttgaaataaaa 23362739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 3967068 - 3967191
Alignment:
Q  34 tatatttaatactaaaaatactatact------gttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaa 127  Q
    ||||||| ||||||||||||| |||||      ||||||| |||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  3967068 tatattttatactaaaaataccatacttgttgtgttgagatagaaatactaaaataccttaaa-attaatcaaaaatc-tgaagcattcataatttgaaa 3967165  T
Q  128 taaaaaccacaagtcttaagcaacat 153  Q
    ||||||||| ||||||| ||||||||    
T  3967166 taaaaaccataagtcttgagcaacat 3967191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 52004469 - 52004663
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||||     
T  52004469 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaagattcatgaagtattcctaatttgaaataaaag 52004565  T
Q  134 ccacaagtcttaagcaaca-ttagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
     |||||||||| ||||| |  || |||||  ||||||| ||||| |||||| || || | || | | ||||||||||||||||| ||| |||||||||    
T  52004566 tcacaagtcttgagcaaaacataaaacatatttgcaaaaaatactaataaagttcaaggaaaccgacactttaagcctctaaagcttaaagtaacaaa 52004663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 52539788 - 52539591
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa- 132  Q
    ||||||||||| ||||| |||||||||||| | ||| |||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  52539788 tatatttaatattaaaa-tactatactgttaaaaaa-aaatactaaaattccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 52539691  T
Q  133 -accacaagtcttaagcaacat-tagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaa 230  Q
       |||||||||| ||||| || || |||||  ||||||| ||||| ||||||| | || | || | | |||||| |||||||||| ||| |||||||||    
T  52539690 tcacacaagtcttgagcaaaatataaaacatatttgcaaaaaatactaataaaagtcaaggaaaccgacactttacgcctctaaagcttaaagtaacaaa 52539591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 20993605 - 20993727
Alignment:
Q  22 cacgaacattagtatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataat 121  Q
    |||| |||||| ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| | ||    
T  20993605 cacggacattaatatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattccttat 20993701  T
Q  122 ttgaaataaaaaccacaagtcttaag 147  Q
    |||||||||||  |||||||||||||    
T  20993702 ttgaaataaaagtcacaagtcttaag 20993727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 42871931 - 42872045
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaatacctt-aaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| ||||| |||||||||||||| |||  |||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||||    
T  42871931 tatatttaatattaaaa-tactatactgttgaaaaa--aatactaaaatacctttaaacattactcaaaattcatgaagtattcctaatttgaaataaaa 42872027  T
Q  133 accacaagtcttaagcaa 150  Q
      |||||||| |||||||    
T  42872028 gtcacaagtcctaagcaa 42872045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 126217 - 126120
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| ||||| ||||||| |||||| ||||||||||||||| | |||||| ||||||||||| |||| | | ||||||||||||||||||||    
T  126217 tatatttaatattaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaaaattcataatgtattcataatttgaaataaaa 126120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 3967879 - 3967792
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatt 122  Q
    |||||||||||||||||  || ||| |||| | ||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||    
T  3967879 tatatttaatactaaaag-accatattgttcaaaaagaaatactaaaataccttaagcattacttaaaattcatgaagtattcataatt 3967792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 41012764 - 41012839
Alignment:
Q  35 atatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaag 111  Q
    |||||||||||||||| ||| ||| |||| | ||||||||||||||||||||||||||||||| |||| ||||||||    
T  41012764 atatttaatactaaaa-taccatattgttcaaaaagaaatactaaaataccttaaacattacttaaaattcatgaag 41012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 51376940 - 51377018
Alignment:
Q  71 aaatactaaaataccttaaacattactcaaaaatcatgaag---cattcataatttgaaataaaaaccacaagtcttaa 146  Q
    ||||||| |||||||||||| ||||||||||| ||||||||   ||||||||| ||||||||||| |||||||||||||    
T  51376940 aaatactgaaataccttaaatattactcaaaattcatgaagtatcattcataagttgaaataaaagccacaagtcttaa 51377018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 8114570 - 8114512
Alignment:
Q  73 atactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaa 131  Q
    |||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||    
T  8114570 atactaaaataccttaaacattactcaaaatttatgaagtattcataatttaaaataaa 8114512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 3170394 - 3170453
Alignment:
Q  73 atactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| |||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  3170394 atactaaaatatcttaaatattactcaaaatttatgaagtattcataatttgaaataaaa 3170453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 28198426 - 28198347
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtcttaa 146  Q
    |||||||||| |||||||||||||   ||||||||| | |||| | ||||||||||||||||||||  ||||||||||||    
T  28198426 aaagaaatacgaaaataccttaaatgatactcaaaatttatgacgtattcataatttgaaataaaagtcacaagtcttaa 28198347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 24196260 - 24196195
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  24196260 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 24196195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 24766389 - 24766324
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  24766389 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 24766324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 8340870 - 8340933
Alignment:
Q  36 tatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  8340870 tatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 8340933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 433
Target Start/End: Original strand, 20009889 - 20009978
Alignment:
Q  347 tcatcctctttttcttcatccttccaat---taacaaactccgggtcatattcatcaatttctaccactttctttgcttttgccttagaa 433  Q
    |||||||||||||||||||||  |||||   |||||||||| || |||||||| |||| | |||||||||||||| ||||| | ||||||    
T  20009889 tcatcctctttttcttcatccccccaatcagtaacaaactcaggatcatattcgtcaactactaccactttctttccttttcctttagaa 20009978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 20009588 - 20009653
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| || |||||||||||| | |||||| |||||||||    
T  20009588 tatatttaatactaaaa-tactataatgttgaaaacgaaatactaaaacaacttaaatattactcaa 20009653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 24195955 - 24195875
Alignment:
Q  347 tcatcctctttttcttcatccttccaat---taacaaactccgggtcatattcatcaatttctaccactttctttgctttt 424  Q
    |||||||||||||||||||||  |||||   |||||||||| || |||||||| |||| | |||||||||||||| |||||    
T  24195955 tcatcctctttttcttcatccccccaatcagtaacaaactcaggatcatattcgtcaactactaccactttctttcctttt 24195875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 47974506 - 47974698
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||||||||| ||||||  |||||| ||||||||||||||| | |||||| |||||||||             |||||||||||||||||||     
T  47974506 tatatttaatactaaaa-tactatgatgttgaaaaagaaatactaaaacaacttaaatattactcaa-------------ttcataatttgaaataaaa- 47974590  T
Q  134 ccacaagtcttaagcaa--cattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcctctaaagtttagagtaacaaag 231  Q
       || |||||| ||||  ||| ||||||| |||||||  ||||| ||||||||| || | |   || ||||||||||||||||| ||| |||||||||     
T  47974591 ---catgtcttaggcaaaacataagaacatacttgcaagaaatactaataaaattcaaggtagcaaacactttaagcctctaaagcttaaagtaacaaaa 47974687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 24766324 - 24766197
Alignment:
Q  113 attcataatttgaaataaaaaccacaagtcttaagcaa--cattagaacatgcttgcaaacaataccaataaaatttaaagcaaacaagactttaagcct 210  Q
    ||||||||||||||||||||    || |||||| ||||  ||| ||||||| |||||||  ||||| ||||||||| || | |   || |||||||||||    
T  24766324 attcataatttgaaataaaa----catgtcttaggcaaaacataagaacatacttgcaagaaatactaataaaattcaaggtagcaaacactttaagcct 24766229  T
Q  211 ctaaagtttagagtaacaaaggttctaaacat 242  Q
    |||||| ||| ||||||||| || ||||||||    
T  24766228 ctaaagcttaaagtaacaaaagtactaaacat 24766197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 36393201 - 36393104
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||| |||| ||  ||||| ||||||||||||||| || ||||| |||| | | || ||||   | ||||||||||||||||||||    
T  36393201 tatatttaatactaaaa-tactgtaaagttgaaaaagaaatactaaaacactttaaatattatttacaattcatagcgtattcataatttgaaataaaa 36393104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 52398406 - 52398476
Alignment:
Q  75 actaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaaccacaagtctta 145  Q
    |||||||||||||  | ||||||  ||| | |||||| || ||||||||||||||||| ||||||||||||    
T  52398406 actaaaataccttgcatattactttaaatttatgaagtatccataatttgaaataaaagccacaagtctta 52398476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 8657 - 8543
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaatacctt-aaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||| ||||| |||||||||||||| |||  |||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||||    
T  8657 tatatttaatattaaaa-tactatactgttgaaaaa--aatactaaaatacctttaaacattactcaaaattcatgaagtattcctaatttgaaataaaa 8561  T
Q  133 accacaagtcttaagcaa 150  Q
      |||||||| |||||||    
T  8560 gtcacaagtcctaagcaa 8543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 26407 - 26312
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  26407 tatattttatactaaaaatactacactgttgagatagaaatactaaaata-cttaaa-attaatcaaaaatc-tgaagcattcataatttgaaataaaa 26312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 38567833 - 38567725
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaaa 133  Q
    ||||||||||| ||||| |||||||||||| | |||  | ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||     
T  38567833 tatatttaatattaaaa-tactatactgttaaaaaa--attactaaaataccttaaacattactcaaaattcatgaagtattcctaatttgaaataaaag 38567737  T
Q  134 ccacaagtctta 145  Q
     |||||||||||    
T  38567736 tcacaagtctta 38567725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 12524973 - 12524886
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatt 122  Q
    |||||||||||||||||  || ||| |||| | ||| ||||||||||||||||| ||||||||| |||| |||||||| ||||||||||    
T  12524973 tatatttaatactaaaag-accatattgttcaaaaacaaatactaaaataccttgaacattacttaaaattcatgaagtattcataatt 12524886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 35449053 - 35449151
Alignment:
Q  34 tatatttaatactaaaaatactatactgttg-agaaagaaatactaaaataccttaaacattactcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||| ||||||| ||||| | ||| ||||||||||| | |||||| ||||||||||| |||| | | |||||| |||||||||||||    
T  35449053 tatatttaatactaaaa-tactataatgttggaaaaaaaaatactaaaacaacttaaatattactcaaaattcataatgtattcatgatttgaaataaaa 35449151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 10290438 - 10290373
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  10290438 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 10290373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 23004087 - 23004021
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||| |||| |||| ||||||||||    
T  23004087 aaagaaatactaaaataccttaaacattagtcaaaatttcatgaagtattcgtaatatgaaataaaa 23004021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 43265385 - 43265450
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  43265385 tatatttaatactaaaa-tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 43265450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 26278625 - 26278701
Alignment:
Q  34 tatatttaatactaaaaatactatactgttgagaaagaaatactaaaataccttaaacattactcaaaaatcatgaag 111  Q
    |||||||||||||||||  || ||| |||| | |||||||||||||| |||||||||||||||| |||| ||||||||    
T  26278625 tatatttaatactaaaac-accatattgttcaaaaagaaatactaaactaccttaaacattacttaaaattcatgaag 26278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 1089961 - 1089926
Alignment:
Q  67 aaagaaatactaaaataccttaaacattactcaaaa 102  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1089961 aaagaaatactaaaataccttaaactttactcaaaa 1089926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 433
Target Start/End: Original strand, 43265682 - 43265771
Alignment:
Q  347 tcatcctctttttcttcatccttccaat---taacaaactccgggtcatattcatcaatttctaccactttctttgcttttgccttagaa 433  Q
    |||||||||||||||||||||  |||||   ||| |||||| || |||||||| |||| | |||||||||||||| ||||| | ||||||    
T  43265682 tcatcctctttttcttcatccccccaatcagtaataaactcaggatcatattcgtcaactactaccactttctttccttttcctttagaa 43265771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 18952670 - 18952585
Alignment:
Q  50 aatactatactgttgagaaagaaatactaaaa-taccttaaacattactcaaaaat-catgaagcattcataatttgaaataaaaa 133  Q
    ||||| ||||| || | ||||||||||||||| ||||| ||||||||||| ||| | ||| || |||||||||| |||||||||||    
T  18952670 aataccatactattcaaaaagaaatactaaaaatacctaaaacattactccaaatttcataaaacattcataatatgaaataaaaa 18952585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 774144 - 774192
Alignment:
Q  52 tactatactgttgagaaagaaatactaaaataccttaaacattactcaa 100  Q
    ||||||| |||||| ||||||||||||||| | |||||| |||||||||    
T  774144 tactataatgttgaaaaagaaatactaaaacaacttaaatattactcaa 774192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 35689 - 35751
Alignment:
Q  71 aaatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||||||    
T  35689 aaatactaaaataccttaaacattactcaaaatttcatgaagtattcataatatgaaataaaa 35751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 83785 - 83725
Alignment:
Q  73 atactaaaataccttaaacatt-actcaaaaatcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||||||||||| ||| |||||||| | |||||| ||||||||||||||||||||    
T  83785 atactaaaataccttaaatatttactcaaaatttatgaagtattcataatttgaaataaaa 83725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 1451 - 1391
Alignment:
Q  72 aatactaaaataccttaaacattactcaaaa-atcatgaagcattcataatttgaaataaaa 132  Q
    |||||||||||||||| || |||||||||||  |||||||| ||||||||| ||||||||||    
T  1451 aatactaaaatacctt-aatattactcaaaatttcatgaagtattcataatatgaaataaaa 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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