View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_111 (Length: 223)
Name: NF20479_low_111
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_111 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 16807189 - 16807005
Alignment:
| Q |
25 |
ggtcttgcacttcttgtattggcttgcttttaataatatatgatttcttattnnnnnnntgtacattttatagagtaattaatctgtatattttgtatat |
124 |
Q |
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| T |
16807189 |
ggtcttgcacttcttgtattggcttgcttttaataatatatgatttcttattaaaaaaatgtacattttatagagtaattaatctgtatattttgtatat |
16807090 |
T |
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| Q |
125 |
aatattaaaagtcaattccaccaaacgaaaaaatacataatttagccaacccaactaatcaaccacaccccataccctatgcttc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16807089 |
aatattaaaagtcaattccaccaaacgaaaaaatacataatttagccaacccaactaatcaaccacaccccataccctatgcttc |
16807005 |
T |
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