View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_116 (Length: 213)

Name: NF20479_low_116
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_116
NF20479_low_116
[»] chr1 (11 HSPs)
chr1 (1-205)||(1816140-1816344)
chr1 (1-205)||(1856700-1856904)
chr1 (1-192)||(1868308-1868499)
chr1 (1-162)||(1842729-1842890)
chr1 (12-138)||(9170802-9170928)
chr1 (12-201)||(9200369-9200558)
chr1 (5-201)||(9218878-9219074)
chr1 (12-140)||(9118348-9118476)
chr1 (5-140)||(9161969-9162104)
chr1 (1-96)||(9156053-9156148)
chr1 (11-150)||(9229769-9229908)
[»] chr7 (3 HSPs)
chr7 (38-205)||(37567642-37567809)
chr7 (1-43)||(37572119-37572161)
chr7 (19-63)||(30105892-30105936)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 1816140 - 1816344
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1816140 ataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcgttaatgaat 1816239  T
Q  101 tgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacctcctctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1816240 tgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaactgtaccaaaacctcctctac 1816339  T
Q  201 ctatg 205  Q
    |||||    
T  1816340 ctatg 1816344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1856904 - 1856700
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1856904 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagagacaacatccacctcattaatgaat 1856805  T
Q  101 tgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacctcctctac 200  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||    
T  1856804 tgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttac 1856705  T
Q  201 ctatg 205  Q
    |||||    
T  1856704 ctatg 1856700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1868499 - 1868308
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaat 100  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||    
T  1868499 ataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaaccacctcattaatgaat 1868400  T
Q  101 tgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacc 192  Q
    || || |||||||||   |||||| |||| || |||||||| ||||| ||||| |||||||| ||    ||||||||||| || ||||||||    
T  1868399 tgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcctttgaaaacggtaccaaaacc 1868308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 1842890 - 1842729
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaat 100  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||||| || |   |||||||||||||||    
T  1842890 ataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaataattacctcattaatgaat 1842791  T
Q  101 tgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatc 162  Q
    || |  |||||||||   |||||| |||| || |||||||| ||||| ||||| ||||||||    
T  1842790 tgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatc 1842729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 9170802 - 9170928
Alignment:
Q  12 aaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttg 111  Q
    ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |  | |||| | ||||||||||||||||| ||||||||    
T  9170802 aaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttg 9170901  T
Q  112 gctttcgtctattgttttggacttttt 138  Q
      || |||| ||| ||||||| |||||    
T  9170902 atttgcgtcaattattttggatttttt 9170928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 9200369 - 9200558
Alignment:
Q  12 aaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttg 111  Q
    ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |  | |||| | ||||||||||||||||| ||||||||    
T  9200369 aaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttg 9200468  T
Q  112 gctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacctcctctacc 201  Q
      || |||| ||| ||||||| ||||| |  || |||||| | ||||||   |   | |||||| ||||||| |||||||||||||||||    
T  9200469 atttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttgtaaactgtaccaaaacctcctctacc 9200558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 9218878 - 9219074
Alignment:
Q  5 accaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgtt 104  Q
    |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | ||||||||||||||||| |    
T  9218878 accaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaactacctcattaatgaattgct 9218977  T
Q  105 caatttggctttcgtctattgttttggactttttgatggcaacaattctcttatc-atcaagttcccctttgaaaactgtgccaaaacctcctctacc 201  Q
    | || ||  || |||||||| |||||||||||||||  || |||||| | |||||   |||  |  |||||||||||||| |||||||||||||||||    
T  9218978 cgatctgatttgcgtctattattttggactttttgacagcgacaattttgttatcgggcaaaat-tcctttgaaaactgtaccaaaacctcctctacc 9219074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 9118476 - 9118348
Alignment:
Q  12 aaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttg 111  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| || | || | | ||||||||||||||||| || |||||    
T  9118476 aaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttgggacagaataactacctcattaatgaattgctcgatttg 9118377  T
Q  112 gctttcgtctattgttttggactttttga 140  Q
      || |||||||| || ||||||||||||    
T  9118376 atttgcgtctattattctggactttttga 9118348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 9161969 - 9162104
Alignment:
Q  5 accaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgtt 104  Q
    |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| || | |||| | ||||| |||||||| || |    
T  9161969 accaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttgggacagaacaactacctcgttaatgaactgct 9162068  T
Q  105 caatttggctttcgtctattgttttggactttttga 140  Q
    |||||||  || | |||||| ||||||| |||||||    
T  9162069 caatttgatttgcatctattattttggattttttga 9162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 9156053 - 9156148
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaat 96  Q
    |||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| || |  ||| | |||||||||||    
T  9156053 ataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttgggataggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 9229769 - 9229908
Alignment:
Q  11 aaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaattt 110  Q
    |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| || | |||| |||||||||| |||||||| || | ||    
T  9229769 aaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttgggacaaaacaaccacctcatttatgaattgctctactt 9229868  T
Q  111 ggctttcgtctattgttttggactttttgatggcaacaat 150  Q
    || |  | || ||| |||||||||| ||||| ||||||||    
T  9229869 gggtggcatccattattttggacttcttgattgcaacaat 9229908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  38 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 137  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  138 tgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacctcctctacctatg 205  Q
    |||| |||||| |||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37572161 - 37572119
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaag 43  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  37572161 ataaaccaaccgaggaacttctgtttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  19 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 63  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University