View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_12 (Length: 556)
Name: NF20479_low_12
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 543
Target Start/End: Original strand, 51670126 - 51670652
Alignment:
| Q |
16 |
ctcgcagaggaaatgatcagaggcctaacaacagtgatttgggatcgaattgatgtcagcttcagtggtagtaggcagaaatatctcgcacataatgcaa |
115 |
Q |
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| T |
51670126 |
ctcgcagaggaaatgatcagaggcctaacaacagtgagttgggatcgaattgatgtcagcttcagtggtagtaggcagaaatatctcgcacataatgcaa |
51670225 |
T |
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| Q |
116 |
ttcaggcaagttagtttctgctttgtgaaaatatagtgcatgtttggataaacggtgagtgaaatccttgcgtggcactgattttaacaaaagttataat |
215 |
Q |
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| T |
51670226 |
ttcaggcaagttagtttctgctttgtgaaaatatagtgcatgtttggataaacggtgagtgaaatccttgcgtggcactgattttaacaaaagttataat |
51670325 |
T |
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| Q |
216 |
ttggaacttcaataaaatcacggtgctagtgtgatttcgtcgaactcacccgcatgcttgagtcataaattctctgttttgaaaatctagtgataatagc |
315 |
Q |
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| T |
51670326 |
ttggaacttcaataaaatcacggtgctagtgtgattttgtcgaactcacccgcatgcttgagtcataaattctctgttttgaaaatctagtgataatagc |
51670425 |
T |
|
| Q |
316 |
ttgccctgacaacttattatttgtcctaactattaactattacatttcaggttcaaacctaccgaattaattccgacggagtagatgtggtccaacacat |
415 |
Q |
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| T |
51670426 |
ttgccctgacatcttattatctgtcctaactattaactattatatttcaggttcaaacctaccgaattaattccgacggagtagatgtggtccaacatat |
51670525 |
T |
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| Q |
416 |
gattgacgattttcagttataaaactttcctatactaccccccttctaacaaatagggtaaagccattattttatcttctcaagtggagacgagctggga |
515 |
Q |
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| T |
51670526 |
gattgacgattttcagttataaaactttcctatatta-cccccttctaacaaatagggtaaagccattattttatcttctcaagtggagacgagctggga |
51670624 |
T |
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| Q |
516 |
tgtttgtggatattcccaccaacttact |
543 |
Q |
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| T |
51670625 |
tgtttgtggatattcccaccaacttact |
51670652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 19390474 - 19390404
Alignment:
| Q |
194 |
tgattttaacaaaagttataatttggaacttcaataaaatcacggtgctagtgtgatttcgtcgaactcac |
264 |
Q |
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|||||||| |||||| | |||||| | |||||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
19390474 |
tgattttatcaaaagcaacaatttgaagcttcaacaaaatcacggtgctactgtgatttcttcgaactcac |
19390404 |
T |
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