View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_13 (Length: 546)

Name: NF20479_low_13
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_13
NF20479_low_13
[»] chr3 (13 HSPs)
chr3 (9-528)||(36001718-36002237)
chr3 (197-245)||(23446685-23446733)
chr3 (197-244)||(23453461-23453508)
chr3 (197-244)||(23477985-23478032)
chr3 (197-244)||(23498434-23498481)
chr3 (197-244)||(23351382-23351429)
chr3 (335-385)||(23351520-23351570)
chr3 (337-385)||(23404231-23404279)
chr3 (337-385)||(23462850-23462898)
chr3 (335-390)||(23471958-23472013)
chr3 (198-244)||(23385721-23385767)
chr3 (348-385)||(23385871-23385908)
chr3 (337-390)||(23439424-23439477)
[»] chr4 (1 HSPs)
chr4 (25-452)||(12897349-12897779)
[»] chr2 (2 HSPs)
chr2 (140-466)||(16337865-16338191)
chr2 (140-466)||(16120973-16121299)


Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 9 - 528
Target Start/End: Original strand, 36001718 - 36002237
Alignment:
Q  9 ggtagattattctcagcaatgttaagcttcttacatttacttagattgagatgagtcagttttctattatgccacatggatgagggtaattcttgtatag 108  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36001718 ggtaaattcttctcagcaatgttaagcttcttacatttacttagattgagatgagtcagttttctattacgccacatggatgagggtaattcttgtatag 36001817  T
Q  109 cagtacaagataaatacaacccagtcatattttctgatgtcacagaaaattccacaagagatgaacaatcattgagactgagtgatttaagagattttga 208  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  36001818 cggtacaagataaatacaacccagtcatattttctgatgtcacagaaaattccacaagagatgaacaattattgagactgagtgattcaagagattttga 36001917  T
Q  209 atgaatgttggttttcaggcttttaatctttttgcagccgtctaaacgtagataactaagcttgggggcagtcaaaatggattcatggagtttacagaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36001918 atgaatgttggttttcaggcttttaatctttttgcagccgtctaaacgtagataactaagcttgggggcagtcaaaatggattcatggagtttacagaga 36002017  T
Q  309 ttctcacaataggaaagagatactagttcaagatttggcgccctagataagtctgggatctcaaccaggtctttggaataatcaagcgcaattttcatta 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |    
T  36002018 ttctcacaataggaaagagatactagttcaagatttggcgccctagataagtctggtatctcaaccaggtctttggaataatcaagctcaattttcatca 36002117  T
Q  409 aattgtctagtttctgtagcataaaagaaacatcacagtgttcagaaagcactaaattcaatcataataatgcatgggtctttgctctggcgcgattcta 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002118 aattgtctagtttctgtagcataaaagaaacatcacagtgttcagaaagcactaaattcaatcataataatgcatgggtctttgctctggcgcgattcta 36002217  T
Q  509 tgaatgagcttatataaatg 528  Q
    ||||||||||||||||||||    
T  36002218 tgaatgagcttatataaatg 36002237  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 23446685 - 23446733
Alignment:
Q  197 aagagattttgaatgaatgttggttttcaggcttttaatctttttgcag 245  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  23446685 aagagattttgaatgaatgttggttttaaggctttcaatctttttgcag 23446733  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 23453461 - 23453508
Alignment:
Q  197 aagagattttgaatgaatgttggttttcaggcttttaatctttttgca 244  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  23453461 aagagattttgaatgaatgttggttttaaggctttcaatctttttgca 23453508  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 23477985 - 23478032
Alignment:
Q  197 aagagattttgaatgaatgttggttttcaggcttttaatctttttgca 244  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  23477985 aagagattttgaatgaatgttggttttaaggctttcaatctttttgca 23478032  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 23498434 - 23498481
Alignment:
Q  197 aagagattttgaatgaatgttggttttcaggcttttaatctttttgca 244  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  23498434 aagagattttgaatgaatgttggttttaaggctttcaatctttttgca 23498481  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 23351382 - 23351429
Alignment:
Q  197 aagagattttgaatgaatgttggttttcaggcttttaatctttttgca 244  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  23351382 aagagattttgaatgaatgttggttttaaggctttcaatctttatgca 23351429  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 23351520 - 23351570
Alignment:
Q  335 ttcaagatttggcgccctagataagtctgggatctcaaccaggtctttgga 385  Q
    |||||||||||  ||||||||||||||||||||||||| ||| ||||||||    
T  23351520 ttcaagatttgtagccctagataagtctgggatctcaatcagatctttgga 23351570  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 23404231 - 23404279
Alignment:
Q  337 caagatttggcgccctagataagtctgggatctcaaccaggtctttgga 385  Q
    |||||||||  ||||||||||||||||||||||||| ||| ||||||||    
T  23404231 caagatttgtagccctagataagtctgggatctcaatcagatctttgga 23404279  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 23462850 - 23462898
Alignment:
Q  337 caagatttggcgccctagataagtctgggatctcaaccaggtctttgga 385  Q
    |||||||||  ||||||||||||||||||||||||| ||| ||||||||    
T  23462850 caagatttgtagccctagataagtctgggatctcaatcagatctttgga 23462898  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 23471958 - 23472013
Alignment:
Q  335 ttcaagatttggcgccctagataagtctgggatctcaaccaggtctttggaataat 390  Q
    |||||||||||  ||||||||||||| ||||||||||| ||| |||||||| ||||    
T  23471958 ttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaat 23472013  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 23385721 - 23385767
Alignment:
Q  198 agagattttgaatgaatgttggttttcaggcttttaatctttttgca 244  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||    
T  23385721 agagattttgaatgaatgttggatttaaggctttcaatctttatgca 23385767  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 23385871 - 23385908
Alignment:
Q  348 gccctagataagtctgggatctcaaccaggtctttgga 385  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  23385871 gccctagataagtctgggatctcaatcagatctttgga 23385908  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 23439424 - 23439477
Alignment:
Q  337 caagatttggcgccctagataagtctgggatctcaaccaggtctttggaataat 390  Q
    |||||||||  |||||||||||||| |||||||||| ||| |||||||| ||||    
T  23439424 caagatttgtagccctagataagtcggggatctcaatcagatctttggagtaat 23439477  T

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Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 25 - 452
Target Start/End: Complemental strand, 12897779 - 12897349
Alignment:
Q  25 caatgttaagcttcttacatttacttagattgagatga---gtcagttttctattatgccacatggatgagggtaattcttgtatagcagtacaagataa 121  Q
    ||||||||||||||||||||| ||||||||  ||| ||   || ||||| | |||  |||| || |||||||| | ||| ||||||||||| | | ||||    
T  12897779 caatgttaagcttcttacattcacttagatcaagacgataagtgagtttccaattgcgccaaattgatgagggaagttcgtgtatagcagtgccacataa 12897680  T
Q  122 atacaacccagtcatattttctgatgtcacagaaaattccacaagagatgaacaatcattgagactgagtgatttaagagattttgaatgaatgttggtt 221  Q
      |||||    |||| |  ||||||||||| ||||| |||   ||||||||||||||| ||||   ||||| |   |||||||||||||||||||| |||    
T  12897679 cgacaacgacatcatttcctctgatgtcaccgaaaactccttgagagatgaacaatcagtgagctcgagtgttcggagagattttgaatgaatgttagtt 12897580  T
Q  222 ttcaggcttttaatctttttgcagccgtctaaacgtagataactaagcttgggggcagtcaaaatggattcatggagtttacagagattctcacaatagg 321  Q
    |||||||||| |||||||||||| || | ||||  ||| |  |||||||| |||||||| |||||||||  ||||||||  |||||| |||| ||||| |    
T  12897579 ttcaggctttcaatctttttgcaaccttttaaatatagttctctaagcttcggggcagtgaaaatggatggatggagttggcagagactctcgcaataag 12897480  T
Q  322 aaagagatactagttcaagatttggcgccctagataagtctgggatctcaaccaggtctttggaataatcaagcgcaattttcattaaattgtctagttt 421  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||| || ||||||||| |||||||||  |||  |||| |||||||| || ||    
T  12897479 aaagagatactagttcaagttttggcgccttagataagtctgggatctcaatcaagtctttggagtaatcaagcataataatcatcaaattgtcaagctt 12897380  T
Q  422 ctgtagcataaaagaaacatcacagtgttca 452  Q
    |||||| | ||||||||||||||| ||||||    
T  12897379 ctgtaggaaaaaagaaacatcacattgttca 12897349  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 140 - 466
Target Start/End: Complemental strand, 16338191 - 16337865
Alignment:
Q  140 ttctgatgtcacagaaaattccacaagagatgaacaatcattgagactgagtgatttaagagattttgaatgaatgttggttttcaggcttttaatcttt 239  Q
    ||||||||||||| ||||||  || || |||||||||||| |||||   |||  ||  |||||||||||||||||||  |||   ||||||| |||||||    
T  16338191 ttctgatgtcacacaaaattgtacgagggatgaacaatcagtgagatccagtctttggagagattttgaatgaatgtcagttacaaggctttcaatcttt 16338092  T
Q  240 ttgcagccgtctaaacgtagataactaagcttgggggcagtcaaaatggattcatggagtttacagagattctcacaataggaaagagatactagttcaa 339  Q
    || || || | ||| | ||| |  ||||||||||||||| | ||||||||   |||||||| |  |||| || ||||||| | |||||||| || || ||    
T  16338091 ttacaaccttttaagcatagttctctaagcttgggggcactgaaaatggaaggatggagttgatggagactcacacaataagcaagagataatattttaa 16337992  T
Q  340 gatttggcgccctagataagtctgggatctcaaccaggtctttggaataatcaagcgcaattttcattaaattgtctagtttctgtagcataaaagaaac 439  Q
    |||| || || || |||||||| || ||||||| ||||||||  || | ||||||   |||  |  |||||||||| || |||||||| |  ||||||||    
T  16337991 gattcggtgctcttgataagtccggaatctcaatcaggtcttcagagttatcaagtttaatgattgttaaattgtcaagcttctgtaggaagaaagaaac 16337892  T
Q  440 atcacagtgttcagaaagcactaaatt 466  Q
    |||||| |||||||||| || ||||||    
T  16337891 atcacattgttcagaaatcattaaatt 16337865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 466
Target Start/End: Original strand, 16120973 - 16121299
Alignment:
Q  140 ttctgatgtcacagaaaattccacaagagatgaacaatcattgagactgagtgatttaagagattttgaatgaatgttggttttcaggcttttaatcttt 239  Q
    ||||||||||||| ||||||  || || |||||||||||| |||||   |||| |   |||||||||||||||||||  |||   ||||||| |||||||    
T  16120973 ttctgatgtcacacaaaattgaacgagggatgaacaatcagtgagatccagtgttaggagagattttgaatgaatgtcagttacaaggctttcaatcttt 16121072  T
Q  240 ttgcagccgtctaaacgtagataactaagcttgggggcagtcaaaatggattcatggagtttacagagattctcacaataggaaagagatactagttcaa 339  Q
     | || || | ||| | ||| |  ||||||||||||||| | |||||||||  |||||||| |  |||| |  ||||||| | |||||||| || || ||    
T  16121073 gtacaaccttttaagcatagttctctaagcttgggggcactgaaaatggatggatggagttgatggagacttacacaataagcaagagataatattttaa 16121172  T
Q  340 gatttggcgccctagataagtctgggatctcaaccaggtctttggaataatcaagcgcaattttcattaaattgtctagtttctgtagcataaaagaaac 439  Q
    |||| || || || |||||||| || ||||||| ||||||||  || | ||||||   |||  |  |||||||||| || |||||||| |  ||||||||    
T  16121173 gattcggtgctcttgataagtccggaatctcaatcaggtcttcagagttatcaagtttaatgattgttaaattgtcaagcttctgtaggaagaaagaaac 16121272  T
Q  440 atcacagtgttcagaaagcactaaatt 466  Q
    |||||| |||||||||| || ||||||    
T  16121273 atcacattgttcagaaatcattaaatt 16121299  T

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