View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_14 (Length: 545)
Name: NF20479_low_14
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 64 - 528
Target Start/End: Complemental strand, 30851486 - 30851024
Alignment:
| Q |
64 |
gataaataaacttatctgagatagttaaatatattttatggaggatagttaatcagaaaatatgatactgataataaagtatgatagttaaatatattta |
163 |
Q |
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| T |
30851486 |
gataaataaacttatttgagataattaaatatattttatggaggatagttaatcagaaaatatgatactgataataaagtatgata-ttaaatatattta |
30851388 |
T |
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| Q |
164 |
actacctcaaataagtttaataacgagttaaagagagacttttgaaagtgttacaattccacactgcttgtttaacctcctcctcactgagcttgaagct |
263 |
Q |
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| T |
30851387 |
actacctcaaataaatttaataacgagttaaagagagacttttgaaagtgttacaattccacactgcttgtttaacctcctcctcactaagcttgaagat |
30851288 |
T |
|
| Q |
264 |
aaagagaatcattatcatcaattctatgaaaatataaaaatgtcctatattcaacgttttaattttattttatcgttattatacctcatttacaacataa |
363 |
Q |
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| T |
30851287 |
aaagagaatcattatcatcaattctatgaaaatataaaaatgtcctatattcaacgttttaattttattttatcgttattatacctcatttacaacataa |
30851188 |
T |
|
| Q |
364 |
acaattttactattagtcaatggttgtatgtattctattattatcaattctataaatgtcgattaagattatgcacacttcctaataaagtaatcgaatg |
463 |
Q |
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| T |
30851187 |
acaattttactattagtcaatggttgtatgtattctattattatcaattctataaatgtcgattaagattatgcacacttcgtaataaaataatcgaatg |
30851088 |
T |
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| Q |
464 |
cactcacttctattataaaatgagtttaacggtctaaaatacaattattagtaaagttactagat |
528 |
Q |
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| T |
30851087 |
cactcacttctgtta-caaatgagtttaacggtctaaaatacaattattagtaaagttactagat |
30851024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30851573 - 30851502
Alignment:
| Q |
1 |
aagacaaaataaatctatcaaataagtgataattatttcagtatcatatctctcataacctttgataaataa |
72 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30851573 |
aagacaaaataaatctatcaaataagtgataattatttcagtatcatatttctcataacctttgataaataa |
30851502 |
T |
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