View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_15 (Length: 539)
Name: NF20479_low_15
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 53673469 - 53672979
Alignment:
| Q |
18 |
ggagttgcaaggggactccattatcttcataaatgttgcaaacacagaataattcatcgtgacattaaagcctccaatgttcttcttggtcctgattatg |
117 |
Q |
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| T |
53673469 |
ggagttgcaaggggactccattatcttcataaatgttgcaaacacagaataattcatcgtgacattaaagcctccaatgttcttcttggtcctgattatg |
53673370 |
T |
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| Q |
118 |
aaccacaggtagatactatagaacagcaagcaatgttctgataacattgattgattttataccaaattcaattcacacaactaatagttttaaattatta |
217 |
Q |
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| T |
53673369 |
aaccacaggtagatactatagaacagcaagcaatgttctaataacattgattgattttataccaaattcaattcacacaactaatagttttaaattatta |
53673270 |
T |
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| Q |
218 |
ctttttgttgcatatattagattactgattttggactagcaaagtggcttcctaacaaatggactcaccatgctgtaatcccagttgagggaacatttgg |
317 |
Q |
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| T |
53673269 |
ctttttgttgcatatattagattactgattttggactagcaaagtggcttcctaacaaatggactcaccatgctgtaatccctgttgagggaacatttgg |
53673170 |
T |
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| Q |
318 |
atatttagcaccagaggtctttatgcatggtattgtggatgagaaaactgatatttttgcatttggtgttcttcttcttgagattgtaactggaagaaga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673169 |
atatttagcaccagaggtctttatgcatggtattgtggatgagaaaactgatatatttgcatttggtgttcttcttcttgagattgtaactggaagaaga |
53673070 |
T |
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| Q |
418 |
cctgttgattcatcaaagcaaaacattctcctatgggtaaatacgcctttcatttcatccatgatatcaatgtagcatctaaacttcagtg |
508 |
Q |
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| T |
53673069 |
cctgttgattcatcaaagcaaaacattctcctatgggtaaatatgcctttcatttcatccatgatatcaatgtagcatctaaacttcagtg |
53672979 |
T |
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