View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_18 (Length: 525)
Name: NF20479_low_18
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 517
Target Start/End: Original strand, 23323743 - 23324244
Alignment:
| Q |
16 |
attattatagcagcatcattatcatacactttgatgttcaaaggtggaacttgaatatcattcaaaggaggtggattgctccaagtaggaagtggtccag |
115 |
Q |
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| T |
23323743 |
attattatagcagcatcattatcatacactttgatgttcaagggtggaacttgaatatcattcaaaggaggtggattgctccaagtaggaagtggtccag |
23323842 |
T |
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| Q |
116 |
caagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaaactttttctttagcaatagaatctatagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23323843 |
caagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaaactttttctttagcaatagaatctatagc |
23323942 |
T |
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| Q |
216 |
aacagttccatgatcagaaactggcttttcactgggcaccctcaaataattgaagtgttgattttgatgatggttgagataggccatgttggtgtttgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23323943 |
aacagttccatgatcagaaactggcttttcactgggcaccctcaaataattgaagtgttgattttgatgatgattgagataggccatgttggtgtttgaa |
23324042 |
T |
|
| Q |
316 |
aactcaggtgaagaaacagtttcaaagaatgaatcgaccggtggagaaccgtgtgagagactgctagattctgtaatgctagggtttgaagagtgaaaca |
415 |
Q |
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| T |
23324043 |
aactcaggtgaagaaacagtttcaaagaatgaatcgaccggtggagaaccgtgtgagagactgctagattctgtaatgctagggtttgaagagtgaaaca |
23324142 |
T |
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| Q |
416 |
ttagaggattttcttgttggaatccagaaatgaacttgtcttggaaatggattggacttaggttgttcattagtttttgcagctgatttttagcttcatc |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23324143 |
ttagaggattttcttgttggaatccagaaatgaacttgtcttggaaatggattggacttgggttgttcattagtttttgcagctgatttttagcttcatc |
23324242 |
T |
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| Q |
516 |
tc |
517 |
Q |
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|| |
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| T |
23324243 |
tc |
23324244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 21010360 - 21010438
Alignment:
| Q |
108 |
tggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaa |
186 |
Q |
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|||||| ||||||| || || ||||||||||||||||| | ||||| ||||||||||||||||| |||| ||||||| |
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| T |
21010360 |
tggtcctgcaagtaaaagggtctgaagcaaaggaccagctttcatcactgcttgtaaaagtttacctttttcaggcaaa |
21010438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 41159811 - 41159943
Alignment:
| Q |
77 |
tcaaaggaggtggattgctccaagtaggaagtggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttaccctt |
176 |
Q |
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|||||||||||||||| |||||||||||||||| || | ||| | || | |||||||||| |||||||||| ||| ||||| | | ||||||||| || |
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| T |
41159811 |
tcaaaggaggtggatttttccaagtaggaagtggcccggaaagaacaagattttgaagcaatggaccagcattaattacagcatcaagaagtttaccttt |
41159910 |
T |
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| Q |
177 |
ttgaggcaaaactttttctttagcaatagaatc |
209 |
Q |
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||| || || |||||| || | |||| |||||| |
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| T |
41159911 |
ttgtggtaacacttttcctcttgcaagagaatc |
41159943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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