View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_19 (Length: 522)
Name: NF20479_low_19
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 8792042 - 8792542
Alignment:
| Q |
1 |
aacgacaaaggagagaaaatgtacattcaaaccagaatggctcaatatgcagaagagttgtgggaattactgaagaaagacaacacttttgtttacatgt |
100 |
Q |
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| T |
8792042 |
aacgacaaaggagagaaaatgtacattcaaaccagaatggctcaatatgcagaagagttgtgggaattactgaagaaagacaacacttttgtttacatgt |
8792141 |
T |
|
| Q |
101 |
gtggactgaaaggaatggaaaagggaattgatgacataatggtttcactcgctgccaaagacggtaagaaaaaca-tttgaatttttattacatgaagca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
8792142 |
gtggactgaaaggaatggaaaagggaattgatgacataatggtttcactcgctgccaaagacggtaagaaaaacattttgaatatttattacatgaagca |
8792241 |
T |
|
| Q |
200 |
tagagggggttttggatagctcaactggtttcagctaatggttagaaggattgaattcaaaccttgaagaaggagaaaatactaacatctgtctatcaaa |
299 |
Q |
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||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8792242 |
tagaggggggtttggatagctcaactg--ttgagctaatggttagaaggattgaattcaaaccttgaagaaggaaaaaatactaacatctgtctatcaaa |
8792339 |
T |
|
| Q |
300 |
nnnnnnnattcaagaatcagagaaactatagtcatcatgttgtgtttgttatgtgttgtaggtattgattggattgagtacaagagatcgctgaagaagg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8792340 |
-ttttttattcaagaatcagagaaactatagtcatcatgttgtgtttgttatgtgttgtaggtattgattggattgagtacaagagatcgctgaagaagg |
8792438 |
T |
|
| Q |
400 |
cagagcaatggaatgttgaagtctattgatttattttcacttgcatcgataacaagttccactttgtgcagcagcatattctatatcattgtcctgcatt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8792439 |
cagagcaatggaatgttgaagtctattgatttattttcacttgcatcgataacaagttccactttgtgcagcagcatattttatatcattgtcctgcatt |
8792538 |
T |
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| Q |
500 |
ctgt |
503 |
Q |
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|||| |
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| T |
8792539 |
ctgt |
8792542 |
T |
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