View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_20 (Length: 505)
Name: NF20479_low_20
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 25 - 489
Target Start/End: Original strand, 37582911 - 37583378
Alignment:
| Q |
25 |
gtcaacagaaaaatgactagagtgtaagtgtttgatgtgcagcctgtgttgtaaattttggttaccatgatcgacttttacatatgaaaaaaatcaacag |
124 |
Q |
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| T |
37582911 |
gtcaacagaaaaatgactagagtgtaagtgtttgatgtgcagcctgtgttgtaaattttggttaccatgatcgacttttacatatgaaaaaaatcaacag |
37583010 |
T |
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| Q |
125 |
nnnnnnnnnn---gactcaaccttgtaaagataataatgttgcaataaatgaatgaatatacaagaaaacataataagggtacatatacatgctatgcat |
221 |
Q |
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| T |
37583011 |
aaaaaaaaaaaaagactcaaccttgtaaagataataatgttgcaataaatgaatgaatatacaagaaaacataataagggtacatatacatgctatgcat |
37583110 |
T |
|
| Q |
222 |
ttgcaaaaagttgggagttggatttagtggaaatggttaaacttctacaatgtggtgaattaatattcgaattttagctttgagagatgctcacatctag |
321 |
Q |
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| T |
37583111 |
ttgcaaaaagttgggagttggatttagtggaaatggttaaacttctacaatgtggtgaattaatattcgaattttagctttgagagatactcacatctag |
37583210 |
T |
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| Q |
322 |
tgtctaacagtgtatcaaatataatgatctccagggaaagaaaccaatgaaaaactaacaaattgcatctggaaaaccgatccgaagtagaatatcaaat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37583211 |
tgtctaacagtgtatcaaatataatgatctccagggaaagaaaccaatgaaaaactaacaaattgcatctggaaaaccgacccgaagtagaatatcaaat |
37583310 |
T |
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| Q |
422 |
gatgaatgaacgttaatactagtgctacaatcacaattcacaggtagaagaagactaagaataattat |
489 |
Q |
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| T |
37583311 |
gatgaatgaacgttaatactagtgctacaatcacaattcacaggtagaagaagactaagaataattat |
37583378 |
T |
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