View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_26 (Length: 458)

Name: NF20479_low_26
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_26
NF20479_low_26
[»] chr2 (9 HSPs)
chr2 (145-458)||(9796278-9796591)
chr2 (145-458)||(9802279-9802592)
chr2 (202-448)||(9757184-9757427)
chr2 (202-269)||(9757151-9757218)
chr2 (202-269)||(9757118-9757185)
chr2 (202-269)||(9756998-9757065)
chr2 (210-263)||(9756865-9756918)
chr2 (202-263)||(9757031-9757092)
chr2 (207-263)||(9756775-9756831)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 145 - 458
Target Start/End: Original strand, 9796278 - 9796591
Alignment:
Q  145 ccttctccatcaccacctatcataactccttccgcacctccacctttgacgcccccacctacgacacctccttccacaccaccgtcaattcctacgacac 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9796278 ccttctccatcaccacctatcataactccttccgcacctccaccttcgacacccccacctacgacacctccttccacaccaccgtcaattcctaggacac 9796377  T
Q  245 ctccttctacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaaacttgaacatttgcgcaaacatattgaataatgcagttgggct 344  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||||| |||    
T  9796378 ctccttctacaccaccaccgattccggtgacacccccgcaaaattgtaaccttttaaacttgaacatttgcgccaaagtattgaataatgtagttgtgct 9796477  T
Q  345 caacccacgaaacactccttgttgtaccctcatcaggggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagga 444  Q
    |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9796478 caacccacgaaacaatcgttgttgtaccctcatcagcggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagga 9796577  T
Q  445 ataagtgttaacat 458  Q
    ||||||||||||||    
T  9796578 ataagtgttaacat 9796591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 145 - 458
Target Start/End: Original strand, 9802279 - 9802592
Alignment:
Q  145 ccttctccatcaccacctatcataactccttccgcacctccacctttgacgcccccacctacgacacctccttccacaccaccgtcaattcctacgacac 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9802279 ccttctccatcaccacctatcataactccttccgcacctccaccttcgacacccccacctacgacacctccttccacaccaccgtcaattcctaggacac 9802378  T
Q  245 ctccttctacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaaacttgaacatttgcgcaaacatattgaataatgcagttgggct 344  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||||| |||    
T  9802379 ctccttctacaccaccaccgattccggtgacacccccgcaaaattgtaaccttttaaacttgaacatttgcgccaaagtattgaataatgtagttgtgct 9802478  T
Q  345 caacccacgaaacactccttgttgtaccctcatcaggggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagga 444  Q
    |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9802479 caacccacgaaacaatcgttgttgtaccctcatcagcggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagga 9802578  T
Q  445 ataagtgttaacat 458  Q
    ||||||||||||||    
T  9802579 ataagtgttaacat 9802592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 202 - 448
Target Start/End: Original strand, 9757184 - 9757427
Alignment:
Q  202 cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaa 301  Q
    |||| |||||||||||  ||||||||  ||||||||| ||| |||||| ||||||||||| | |||||    ||||| ||||  ||||||   |||||||    
T  9757184 cctaggacacctccttttacaccaccaccaattcctaggactcctcctactacaccaccatcaattccaacaacaccgccgcgtaattgtccacttttaa 9757283  T
Q  302 acttgaacatttgcgcaaacatattgaataatgcagttgggctcaacccacgaaacactccttgttgtaccctcatcaggggccttgttgatctagatgc 401  Q
     ||||||  |||| || ||| ||||||||||   | | | | | |||||| ||  || ||||||||||| ||||||||| |||||||||||| |||| ||    
T  9757284 gcttgaatgtttgtgccaacctattgaataa---attcgtgattaacccaggatccaatccttgttgtagcctcatcagcggccttgttgatttagacgc 9757380  T
Q  402 cgctgtgtgtgtttgcgctgcactcaaagctaatatcataggaataa 448  Q
      |||||||| ||||| ||||||| ||||||||| || |||||||||    
T  9757381 ttctgtgtgtctttgcactgcacttaaagctaatgtcttaggaataa 9757427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 9757151 - 9757218
Alignment:
Q  202 cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc 269  Q
    |||| |||||||||||| ||||||||  ||||||||| ||||||||||| |||||||||||| |||||    
T  9757151 cctaggacacctccttcgacaccaccaccaattcctaggacacctccttttacaccaccaccaattcc 9757218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 9757118 - 9757185
Alignment:
Q  202 cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc 269  Q
    |||| |||||||||| ||||||||||  ||| ||||| |||||||||||| ||||||||||| |||||    
T  9757118 cctaggacacctcctaccacaccaccaccaaatcctaggacacctccttcgacaccaccaccaattcc 9757185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 9756998 - 9757065
Alignment:
Q  202 cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc 269  Q
    |||| |||||||||| ||||||||||| ||| ||||| |||||||||| | | ||||||||| |||||    
T  9756998 cctaggacacctcctaccacaccaccgacaaatcctaggacacctcctaccataccaccaccaattcc 9757065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 9756865 - 9756918
Alignment:
Q  210 acctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc 263  Q
    ||||||| ||||||||||  ||| ||||| |||||||||||| |||||||||||    
T  9756865 acctcctaccacaccaccaccaaatcctatgacacctccttcgacaccaccacc 9756918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 9757031 - 9757092
Alignment:
Q  202 cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc 263  Q
    |||| |||||||||| ||| ||||||  ||||||||| |||||||||| | |||||||||||    
T  9757031 cctaggacacctcctaccataccaccaccaattcctaggacacctcctaccacaccaccacc 9757092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 9756775 - 9756831
Alignment:
Q  207 gacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc 263  Q
    |||||||||| ||||||||||| ||| ||| | |||||||||| | |||||||||||    
T  9756775 gacacctcctaccacaccaccgacaaatcccaggacacctcctaccacaccaccacc 9756831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University