View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_27 (Length: 454)
Name: NF20479_low_27
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 216 - 439
Target Start/End: Complemental strand, 26566597 - 26566374
Alignment:
| Q |
216 |
gtattgctgatatatagtagacactaaagaacacaaaggatgaaggttaagttacattgatgggttgagtgtgtctacattgatgttgtacaagacattc |
315 |
Q |
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| T |
26566597 |
gtattgctcatatatagtagacactaaagaacacaaaggatgaaggttaagttacattgatgggttgagtgtgtctacattgatgttgtacaagacattc |
26566498 |
T |
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| Q |
316 |
atgtaaataaaactcttttacttatagcaaaatacttctatagaacaaatttttaaaaaaggaaattttaataatgtatatatttacatacaatcaatat |
415 |
Q |
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| T |
26566497 |
atgcaaataaaactcttttacttatagcaaaatacttctatagaacaaatttttaaaaaaagaaattttaataatgtatatatttacatacaatcaatat |
26566398 |
T |
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| Q |
416 |
atggaagtgagctattacatactt |
439 |
Q |
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| T |
26566397 |
atggaagtgagctattacatactt |
26566374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 26566735 - 26566604
Alignment:
| Q |
10 |
aagaatatgcactttcccaagaaggagcatagaaatcatatcaagattcaaagaataaaattgcaattttaattaaatcccactagccagccatttacac |
109 |
Q |
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| T |
26566735 |
aagaaaatgcactttcccatgaaggagcatagaaatcatatcaagattcaaagaataaaattgcaattt---ttaaatcccactagccagccatttacac |
26566639 |
T |
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| Q |
110 |
aatatcctacatttcttttcttagttgttaaatat |
144 |
Q |
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| T |
26566638 |
aatatcctacatttcttttctcagttgttaaatat |
26566604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 26566588 - 26566542
Alignment:
| Q |
141 |
atatatagtagacactaaagaatacaaacgacgaaggttaagttaca |
187 |
Q |
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| T |
26566588 |
atatatagtagacactaaagaacacaaaggatgaaggttaagttaca |
26566542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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