View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_30 (Length: 443)
Name: NF20479_low_30
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 1494912 - 1495335
Alignment:
| Q |
19 |
ctgattctggttagaattttgacaaattaatccaccctctttaaactttatcttaaaagtttatgattgcattaacttatgactatct--------gtta |
110 |
Q |
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| T |
1494912 |
ctgattctggttagaattttgacaaattaatccaccctctttaaactttatcttaaaagtttatgattgcattaacttatgactatctcttagactgtta |
1495011 |
T |
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| Q |
111 |
ccagaactcgagaagcacattcccgatctgcatgtcctgatatctacaccatttcaccctgcctatgtaaccgaggaaagaattaataaagctaagaatt |
210 |
Q |
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| T |
1495012 |
ccagaactcgagaagcacattcccgatctgcatgtcctgatatctacaccatttcaccctgcctatgtaaccgaggaaagaattaagaaagctaagaatt |
1495111 |
T |
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| Q |
211 |
tacagttgcttttaactgctggcattggttccgatcacattgatctcaaagctgcggctgctgctggtttaaccgtcgcagaggtcacaggaagcaatgt |
310 |
Q |
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| T |
1495112 |
tacagttgcttttaactgctggcattggttccgatcacattgatctcaaagctgcggctgctgctggtttaaccgtcgcagaggtcacaggaagcaacgt |
1495211 |
T |
|
| Q |
311 |
agtatcggttgctgaggatgagcttatgagaattctcattctcgtgaggaatttcttgcctggttacaagcaggctgttgccggagaatggaatgttgct |
410 |
Q |
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| T |
1495212 |
agtatcggttgctgaggatgagcttatgagaattctcattctcgtgaggaatttcttgcctggttacaagcaggctgttgccggagaatggaatgttgct |
1495311 |
T |
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| Q |
411 |
ggtatattgcacatagagcctatgat |
436 |
Q |
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| T |
1495312 |
gg--tattgcacatagagcctatgat |
1495335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 106 - 436
Target Start/End: Original strand, 1490275 - 1490603
Alignment:
| Q |
106 |
tgttaccagaactcgagaagcacattcccgatctgcatgtcctgatatctacaccatttcaccctgcctatgtaaccgaggaaagaattaataaagctaa |
205 |
Q |
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|||| |||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| || | |||||||||||| |||||||| |
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| T |
1490275 |
tgttgccagaacttgagaagcacattcctgatctcaatgtcctgatatccacaccatttcaccctgcctatgtcactgcggaaagaattaagaaagctaa |
1490374 |
T |
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| Q |
206 |
gaatttacagttgcttttaactgctggcattggttccgatcacattgatctcaaagctgcggctgctgctggtttaaccgtcgcagaggtcacaggaagc |
305 |
Q |
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| T |
1490375 |
gaatttagagctgcttttaactgccggcattggttctgatcacattgatctcaatgctgcggctgctgctggtttaaccgtcgcagaggtcacaggaagc |
1490474 |
T |
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| Q |
306 |
aatgtagtatcggttgctgaggatgagcttatgagaattctcattctcgtgaggaatttcttgcctggttacaagcaggctgttgccggagaatggaatg |
405 |
Q |
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|| || |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| | |||||| || ||||||||||||||| |
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| T |
1490475 |
aacactgtgtcggttgctgaggacgagctcatgagaattctcattcttgtgaggaatttcttgcctggttaccatcaggctattaccggagaatggaatg |
1490574 |
T |
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| Q |
406 |
ttgctggtatattgcacatagagcctatgat |
436 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
1490575 |
ttgctgg--aattgcacatagagcctatgat |
1490603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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