View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_low_32 (Length: 410)
Name: NF20479_low_32
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_32 |
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| [»] scaffold0717 (1 HSPs) |
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| [»] scaffold1562 (1 HSPs) |
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| [»] scaffold1158 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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Alignment Details
Target: scaffold0717 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 2714 - 2332
Alignment:
| Q |
18 |
gcaacaaatccatatttctttttaggtctataataatagctcattcttccgttttactccttaacaatattgtgaaataaatagcaaatcgcggaacaat |
117 |
Q |
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|||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2714 |
gcaacatatccatatttcttttttggtctataataattgctcattcttccgttttactccttaacaatattgtgaaataaatagcaaatcgcggaacaat |
2615 |
T |
|
| Q |
118 |
actgatttgttcaaatttcgctacgttatatatcattgtgatatctttgtatataacagtatcaaagtattatagattaccgtattcaatgggaattggt |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2614 |
actgatttgttcaaatttcgctacgttatatatcattgtgatatctttgtatatatcagtatcaaagtattatagattaccgtattcaatgggaattggt |
2515 |
T |
|
| Q |
218 |
aattgtttaacggttcagaaatatatagagctatatcacta-aatgttgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2514 |
aattgtttaacggttcagaaatatatagagctatatcactataatgtcgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtt |
2415 |
T |
|
| Q |
317 |
tcaactataccttccccaatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttctt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2414 |
tcaactataccttccccaatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttctt |
2332 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1562 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold1562
Description:
Target: scaffold1562; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 1438 - 1055
Alignment:
| Q |
18 |
gcaacaaatccatatttctttttaggtctataataatagctcattcttccgttttactccttaacaatattgtgaaataaatagcaaatcgcggaacaat |
117 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438 |
gcaacaaatccatatttctttttaggtttataataatgactcattcttccgtcttactccttaacaatattgtgaaataaatagcaaatcgcggaacaat |
1339 |
T |
|
| Q |
118 |
actgatttgttcaaatttcgctacgttatatatcattgtgatatctttgtatataacagtatcaaagtattatagattaccgtattcaatgggaattggt |
217 |
Q |
| |
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|||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
1338 |
actgatttgttcaaatttcgataagttatatatcactgtgatatctttgtatatagcagtatcaaagtattatagattaccgtattcaatgtgaattagt |
1239 |
T |
|
| Q |
218 |
aattgtttaacggttcagaaata-tatagagctatatcacta-aatgttgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgt |
315 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1238 |
aattgtttaacggttcataaatattatagagctatatcactataatgtcgttaactattcctctaatgaatcctcttaattgattgtatactttcaatgt |
1139 |
T |
|
| Q |
316 |
ttcaactataccttccccaatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttctt |
399 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1138 |
ttcagctataccttctccaatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacttattaacttctt |
1055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1158 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold1158
Description:
Target: scaffold1158; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 1155 - 1538
Alignment:
| Q |
18 |
gcaacaaatccatatttctttttaggtctataataatagctcattcttccgttttactccttaacaatattgtgaaataaatagcaaatcgcggaacaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1155 |
gcaacaaatccatatttctttttaggtttataataatgactcattcttccgtcttactccttaacaatattgtgaaataaatagcaaatcgcggaacaat |
1254 |
T |
|
| Q |
118 |
actgatttgttcaaatttcgctacgttatatatcattgtgatatctttgtatataacagtatcaaagtattatagattaccgtattcaatgggaattggt |
217 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
1255 |
actgatttgttcaaatttcgataagttatatatcactgtgatatctttgtatatagcagtatcaaagtattatagattaccgtattcaatgtgaattagt |
1354 |
T |
|
| Q |
218 |
aattgtttaacggttcagaaata-tatagagctatatcacta-aatgttgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgt |
315 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1355 |
aattgtttaacggttcataaatattatagagctatatcactataatgtcgttaactattcctctaatgaatcctcttaattgattgtatactttcaatgt |
1454 |
T |
|
| Q |
316 |
ttcaactataccttccccaatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttctt |
399 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1455 |
ttcagctataccttctccaatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacttattaacttctt |
1538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 46 - 399
Target Start/End: Complemental strand, 20535049 - 20534682
Alignment:
| Q |
46 |
tataataatagctcattcttccgttttactccttaacaatattgtgaaataaatagcaaatcgcggaacaatactgatttgttcaaatttcgctacgtta |
145 |
Q |
| |
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||||||||| ||||||| |||| | ||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||||| |
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| T |
20535049 |
tataataatggctcatttttccatcttactccttaacaatgttgtggaataaatagcaaatcgcggaacagtattgatttgttcaaattccgctacgtta |
20534950 |
T |
|
| Q |
146 |
ta------tatcattgtgatatctttgtatataacagta------tcaaagtattatagattaccgtattcaatgggaattggtaattgtttaacggttc |
233 |
Q |
| |
|
|| ||||| ||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20534949 |
tagagctatatcaccgtgatatctctgtatatagcggtagcggtatcaaagtattatagattaccgtattcaatgggaattggtaattgtttaacggttc |
20534850 |
T |
|
| Q |
234 |
agaaatat-atagagctatatcacta-aatgttgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaactataccttcc |
331 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20534849 |
agaaatattatagagctatatcactataatgttgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaactataccttcc |
20534750 |
T |
|
| Q |
332 |
ccaatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttctt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20534749 |
ccaatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttctt |
20534682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 13296536 - 13296500
Alignment:
| Q |
111 |
gaacaatactgatttgttcaaatttcgctacgttata |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
13296536 |
gaacaataatgatttgttcaaatttcgctacgctata |
13296500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 46 - 399
Target Start/End: Original strand, 2665 - 3029
Alignment:
| Q |
46 |
tataataatagctcattcttccgttttactccttaacaatattgtgaaataaatagcaaatcgcggaacaatactgatttgttcaaatttcgctacgtta |
145 |
Q |
| |
|
||||||||| ||||||| |||||| ||| ||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
2665 |
tataataatggctcatttttccgtcttagtccttaacaatgttttgaaataaatagcaaatcgcagaacaatattgatttgttcaaattccgctatgtta |
2764 |
T |
|
| Q |
146 |
ta------tatcattgtgatatctttg-tata----taacagtatcaaagtattatagattaccgtattcaatgggaattggtaattgtttaacggttca |
234 |
Q |
| |
|
|| ||||| ||||||||| || |||| || | ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
2765 |
tagagctatatcaccgtgatatctctgatatagcggtagcggtatcaaagtattatagattaccgtatacaatgggaattgataattgtttaagggttca |
2864 |
T |
|
| Q |
235 |
gaaatat-atagagctatatcacta-aatgttgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaactataccttccc |
332 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
2865 |
gaaatattatagagctatatcactataatgtcgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattatacctt--c |
2962 |
T |
|
| Q |
333 |
caatctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttctt |
399 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2963 |
cattctcttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttctt |
3029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 9742544 - 9742573
Alignment:
| Q |
105 |
atcgcggaacaatactgatttgttcaaatt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9742544 |
atcgcggaacaatactgatttgttcaaatt |
9742573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 39417798 - 39417762
Alignment:
| Q |
98 |
atagcaaatcgcggaacaatactgatttgttcaaatt |
134 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
39417798 |
atagcatatcgcggaacaatagtgatttgttcaaatt |
39417762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 39647149 - 39647201
Alignment:
| Q |
95 |
taaatagcaaatcgcggaacaatactgatttgttcaaatttcgctacgttata |
147 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
39647149 |
taaatagcatatcgcagaacaataacgatttgttcaaattccgctgcgttata |
39647201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 35580992 - 35580940
Alignment:
| Q |
277 |
tctaatgaatcctcttaatcgattgtatactttcaatgtttcaactatacctt |
329 |
Q |
| |
|
||||||| ||| | |||||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
35580992 |
tctaatgtatcattttaatcaattatatactttcgatgtttcaactatacctt |
35580940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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