View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_low_33 (Length: 410)
Name: NF20479_low_33
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_33 |
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| [»] scaffold0060 (2 HSPs) |
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| [»] chr7 (7 HSPs) |
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| [»] scaffold1769 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 69594 - 69185
Alignment:
| Q |
1 |
ctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgtttt |
100 |
Q |
| |
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||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69594 |
ctccatctttttcagcataatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgtttt |
69495 |
T |
|
| Q |
101 |
acgcctctttacatgaattataccatattttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattccttta |
200 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69494 |
acgcctctttccatggattataccatattttgcgcctaacagttggaaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattccttta |
69395 |
T |
|
| Q |
201 |
aacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
69394 |
aacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccagaaaagtttatcctctatcaagtctattctttcaactatcttg |
69295 |
T |
|
| Q |
301 |
aattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagcatcactataaccggtatttgacat |
400 |
Q |
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||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69294 |
aattctagagtgcctaacatgctaaatttcaaaatctcaagaccaactcataccttccaatgctgctaaatttagcatcactataaccggtatttgacat |
69195 |
T |
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| Q |
401 |
cattttgtac |
410 |
Q |
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|||||||||| |
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| T |
69194 |
cattttgtac |
69185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 216 - 349
Target Start/End: Complemental strand, 65443 - 65306
Alignment:
| Q |
216 |
ccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttat------cctctatcaagtctattctttcaactatcttcaattctaga |
309 |
Q |
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||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||| ||||||||||||| |||| |||| |||| |
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| T |
65443 |
ccaaaacaaaattaacatgataagttgaaattccagtttttg--aaagtttattcttaacctctatcaagtttattctttcaactgtcttaaattgtaga |
65346 |
T |
|
| Q |
310 |
gtgcctaaaatgctaaatttcaaaatttgaagaccaactc |
349 |
Q |
| |
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|||||||| |||||| |||||||||| | || |||||||| |
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| T |
65345 |
gtgcctaacatgctatatttcaaaatctcaaaaccaactc |
65306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 8442359 - 8442778
Alignment:
| Q |
1 |
ctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8442359 |
ctccatcattttctgcagaatctctcttaaataattctccttatacaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgtttt |
8442458 |
T |
|
| Q |
101 |
acgcctctttacatgaattataccatattttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattccttta |
200 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8442459 |
acgcctctttacatggattataccatattttgcgcttaacagtcggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattccttta |
8442558 |
T |
|
| Q |
201 |
aacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8442559 |
aacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttg |
8442658 |
T |
|
| Q |
301 |
aattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagca----------tcactataaccgg |
390 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8442659 |
aattctagagtgcctaacatgctaaatttcaaaatctgaagaccaactcataccttccaatgctgctaaatttagcatcactaatattcactataaccgg |
8442758 |
T |
|
| Q |
391 |
tatttgacatcattttgtac |
410 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
8442759 |
tatttgacatcattttgtac |
8442778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 360
Target Start/End: Complemental strand, 7915665 - 7915473
Alignment:
| Q |
172 |
tcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagt----tta |
267 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||| |||| |||| |||||||| ||| | ||| |
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| T |
7915665 |
tcaaccatgttatttcaaaaatccctttaaacttatagaatgccccaaaacataattaatatgaaaagtagaaagtccacttt--ttaaatttattctta |
7915568 |
T |
|
| Q |
268 |
tcctctatcaagtctattctttcaactatcttcaat--tctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaa |
360 |
Q |
| |
|
|||||||||||| ||| ||||||| | |||| ||| | |||||||| || ||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7915567 |
acctctatcaagtgtatcctttcaattgtcttgaattgtatagagtgcagaacatgctaaatttcaaaatctcaagaccaactcataccttccaa |
7915473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 352
Target Start/End: Original strand, 8364280 - 8364505
Alignment:
| Q |
129 |
tttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattcctttaaacttataggatgccccaaaacaaaatt |
228 |
Q |
| |
|
|||| |||||| || ||||||||||| |||||||| || || ||| |||||||||| | ||| | |||| |||||| || |||| ||| |||||||| |
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| T |
8364280 |
tttgtgcctaaaaggtggcaaattgcgttcactttccaatagttcagccaagttattcccaaagtcgcttttaacttacagaatgctccataacaaaata |
8364379 |
T |
|
| Q |
229 |
aacatgataagttgaaattccactttccggaaaagtttat------cctctatcaagtctattctttcaactatcttcaattctagagtgcctaaaatgc |
322 |
Q |
| |
|
|||||||||||||||| ||||| ||| | ||||||||| |||||||||||| ||||||||||||| || |||| ||||||||| || |||| |
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| T |
8364380 |
aacatgataagttgaagttccagtttttg--aaagtttattcttaacctctatcaagtgtattctttcaactgtcg--aattgtagagtgccgaacatgc |
8364475 |
T |
|
| Q |
323 |
taaatttcaaaatttgaagaccaactcata |
352 |
Q |
| |
|
||||||||||||| | |||||||||||||| |
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|
| T |
8364476 |
taaatttcaaaatctcaagaccaactcata |
8364505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 352
Target Start/End: Original strand, 8348331 - 8348494
Alignment:
| Q |
196 |
ctttaaacttataggatgccccaaaacaaaattaacatgata--agttgaaattccactttccggaaaagtttat------cctctatcaagtctattct |
287 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||| || |||| |||||| ||||| |||||| |||||| |
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| T |
8348331 |
cttttaacttatagaatgccccaaaacaaaattaacctgatataagttgaaattccacatttttgaaa-gtttattcgtaacctctttcaagtgtattct |
8348429 |
T |
|
| Q |
288 |
ttcaactatcttcaattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcata |
352 |
Q |
| |
|
||||||| ||| |||| |||||| || || |||||||| |||||||| | |||||||||||||| |
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|
| T |
8348430 |
ttcaactgtctcgaattgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcata |
8348494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 8348555 - 8348608
Alignment:
| Q |
357 |
ccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtac |
410 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||||||||| |
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| T |
8348555 |
ccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtac |
8348608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 7915374 - 7915318
Alignment:
| Q |
354 |
cttccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtac |
410 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |
|
|
| T |
7915374 |
cttccaatgctgctaaatttagcatcgctatagccggtatttggcatgattttgtac |
7915318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 8409801 - 8409843
Alignment:
| Q |
354 |
cttccaatgctgctaaatttagcatcactataaccggtatttg |
396 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
8409801 |
cttccaatgctgctaaatttagcatcgctatagccggtatttg |
8409843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 673 - 254
Alignment:
| Q |
1 |
ctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgtttt |
100 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
673 |
ctccatctttttcagcataatctctcttaaataattctccttttacaaaaatgaacccttcaaatcattgtcatcctcaacgtatttgtttccatgtttt |
574 |
T |
|
| Q |
101 |
acgcctctttacatgaattataccatattttgcgcctaacagttggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattccttta |
200 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
573 |
acgcctctttccatggattataccatattttgcgcttaacagtcggcaaattgcattcactttacagaaggtcaaccaagttatttcaaaaattccttta |
474 |
T |
|
| Q |
201 |
aacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttatcctctatcaagtctattctttcaactatcttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
473 |
aacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttcctgaaaagtttatcctctatcaagtctattctttcaactatcttg |
374 |
T |
|
| Q |
301 |
aattctagagtgcctaaaatgctaaatttcaaaatttgaagaccaactcataccttccaatgctgctaaatttagcatc----------actataaccgg |
390 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
373 |
aattctagagtgcctaacatgctaaatttcaaaatctcaagaccaactcataccttccaatgctgctaaatttagcatcactaatattcactataaccgg |
274 |
T |
|
| Q |
391 |
tatttgacatcattttgtac |
410 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
273 |
tatttgacatcattttgtac |
254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 985691 - 985606
Alignment:
| Q |
1 |
ctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtatt |
86 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
985691 |
ctccatcattttctgcagaatctctctcaaataatcctccttctacagaaatgaaccctccaaatcatcgtcattctcaacgtatt |
985606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1999332 - 1999417
Alignment:
| Q |
1 |
ctccatcattttctgcagaatctctcttaaataattctccttctacaaaaatgaacccttcaaatcattgtcatcctcaacgtatt |
86 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
1999332 |
ctccgtcattttctgcagaatctctctcaaataatcctccttctacagaaatgaaccctccaaatcatcgtcattctcaacgtatt |
1999417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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