View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_34 (Length: 408)
Name: NF20479_low_34
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 41 - 401
Target Start/End: Original strand, 24706888 - 24707260
Alignment:
| Q |
41 |
cagaaactcagcatcatctccagatcacaaacacattataatatagttagtttagttagttacaaccggtaacttgatgtacaagttagccaattatctt |
140 |
Q |
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| T |
24706888 |
cagaaactcagcatcatctccagatcacaaacacattataatatagttagtttagttagttacaaccggtaacttgatgtacaagttagccaattatctt |
24706987 |
T |
|
| Q |
141 |
ttcattcctatataaaggattcatgttattaacttgatgttaaatcaattcattcaatagattcagttacattggttcttctctaacctctgagtcctaa |
240 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24706988 |
ttcattcctatataaaggattaatgttattaacttgatgttaaatcaattcattcaatagattcagttacattgattcttctctaacctctgagtcctaa |
24707087 |
T |
|
| Q |
241 |
gactaaacctatttacaagaggattacattcctcaaacttaaatttatgaccagataatgaataactatcttttga------------ttgtttttactc |
328 |
Q |
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| T |
24707088 |
gactaaacctatttacaagaggattacattcctcaaacttaaatttatgaccagataatgaataactatcttttgattgttagctaatttgtttttactt |
24707187 |
T |
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| Q |
329 |
aaattaatagtcaagtttaagtaggatactgtgttgtaggtctttctgccacgattcactgaaattcatctca |
401 |
Q |
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| T |
24707188 |
aaattaatagtcaagtttaaataggatactatgttgtaggtctttctgccacgattcactgagattcagctca |
24707260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 30512785 - 30512691
Alignment:
| Q |
226 |
acctctgagtcctaagactaaacctatttacaagaggattacattcctcaaacttaaatttatgaccagataatgaataactatcttttgattgt |
320 |
Q |
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| T |
30512785 |
acctctgattcctaacactatacctattcataataggatttcattactcaaacttaaatttatgaacagataatgaacgactatcttttgtttgt |
30512691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 3030079 - 3030146
Alignment:
| Q |
157 |
ggattcatgttattaacttgatgttaaatcaattcattcaatagattcagttacattggttcttctct |
224 |
Q |
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|||||||||| | |||||||| |||| |||| || |||||||||||||||||| |||| ||||||||| |
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| T |
3030079 |
ggattcatgtaactaacttgaagttagatcattttattcaatagattcagttaaattgattcttctct |
3030146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 25127113 - 25127046
Alignment:
| Q |
157 |
ggattcatgttattaacttgatgttaaatcaattcattcaatagattcagttacattggttcttctct |
224 |
Q |
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|||||||||| | |||||||| |||| |||| || |||||||||||||||||| |||| ||||||||| |
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| T |
25127113 |
ggattcatgtaactaacttgaagttagatcattttattcaatagattcagttaaattgattcttctct |
25127046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 27659684 - 27659549
Alignment:
| Q |
79 |
taatatagttagttt-agttagttacaaccggtaacttgatgtacaagttagccaattatcttttcattcctatataaaggattcatgttattaacttga |
177 |
Q |
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||||||||||||||| ||||||||||||| |||||||| | ||||||| ||| ||| |||| ||| ||||||| | ||||| ||| | |||||||| |
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| T |
27659684 |
taatatagttagttttagttagttacaacaagtaacttgctagacaagtttaccagttagctttccatctctatatatatgattcttgtaagtaacttga |
27659585 |
T |
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| Q |
178 |
tgttaaatcaattcattcaatagattcagttacatt |
213 |
Q |
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| | ||||||||||| ||||||||| |||||||| |
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| T |
27659584 |
actcatatcaattcatttaatagattcggttacatt |
27659549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 27118752 - 27118814
Alignment:
| Q |
55 |
catctccagatcacaaacacattataatatagttag-tttagttagttacaaccggtaacttg |
116 |
Q |
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|||||| |||||||||| ||| || ||||||||||| |||||||| ||||||| ||||||||| |
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| T |
27118752 |
catctcaagatcacaaatacactaaaatatagttagttttagttacttacaactggtaacttg |
27118814 |
T |
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