View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_35 (Length: 407)

Name: NF20479_low_35
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_35
NF20479_low_35
[»] chr8 (14 HSPs)
chr8 (263-393)||(6662483-6662612)
chr8 (263-393)||(6742885-6743014)
chr8 (97-263)||(6804223-6804390)
chr8 (263-393)||(6586798-6586927)
chr8 (1-83)||(6730131-6730213)
chr8 (1-83)||(6649765-6649847)
chr8 (1-82)||(6591728-6591809)
chr8 (1-83)||(6617419-6617501)
chr8 (97-165)||(6591585-6591653)
chr8 (101-165)||(6617280-6617344)
chr8 (97-173)||(6649612-6649687)
chr8 (4-83)||(6804464-6804546)
chr8 (48-83)||(6793618-6793653)
chr8 (36-83)||(6594043-6594093)
[»] scaffold1190 (1 HSPs)
scaffold1190 (263-393)||(1849-1978)
[»] scaffold0470 (2 HSPs)
scaffold0470 (1-83)||(6737-6819)
scaffold0470 (101-165)||(6598-6662)
[»] chr1 (1 HSPs)
chr1 (263-341)||(40091093-40091170)
[»] scaffold0514 (1 HSPs)
scaffold0514 (48-83)||(2970-3005)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 263 - 393
Target Start/End: Complemental strand, 6662612 - 6662483
Alignment:
Q  263 tgattttccaatacattcatcgtctacagagtggaagatatacaagagcgaaagaggctgagacatgggaatatgctttatataaatatatgtatttgtt 362  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  6662612 tgattttccaatacatccatcgtctacagagtggaagatatacaagagcgaa-gaggctcagacatgggaatatgctttatataaatatatgtatttgtt 6662514  T
Q  363 tgataagcaatttactttacctttcattcat 393  Q
    |||||||||||||||||||||||||||||||    
T  6662513 tgataagcaatttactttacctttcattcat 6662483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 263 - 393
Target Start/End: Complemental strand, 6743014 - 6742885
Alignment:
Q  263 tgattttccaatacattcatcgtctacagagtggaagatatacaagagcgaaagaggctgagacatgggaatatgctttatataaatatatgtatttgtt 362  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  6743014 tgattttccaatacatccatcgtctacagagtggaagatatacaagagcgaa-gaggctcagacatgggaatatgctttatataaatatatgtatttgtt 6742916  T
Q  363 tgataagcaatttactttacctttcattcat 393  Q
    |||||||||||||||||||||||||||||||    
T  6742915 tgataagcaatttactttacctttcattcat 6742885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 97 - 263
Target Start/End: Complemental strand, 6804390 - 6804223
Alignment:
Q  97 aatggtaagaggcaaagccccaacccaatttggttg-tgggatttttactttagtatcaactttatctacaaaacaataccatagtctactttatctatg 195  Q
    ||||||||||||| |||| | |||||||||| |||| ||| ||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  6804390 aatggtaagaggctaagctcgaacccaattttgttgctggaatttttagtttggtatcaactttatctacaaaacaatatcataatctactttatctatg 6804291  T
Q  196 tattgcttctacaacaaaaatataatactgtctacaataacgtgagaagaactcatagctgtcctatt 263  Q
     ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||    
T  6804290 gattgcttctacaacaaaaatagaataccgtctacaatgacgtgagaagacctcatagctgtcctatt 6804223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 263 - 393
Target Start/End: Complemental strand, 6586927 - 6586798
Alignment:
Q  263 tgattttccaatacattcatcgtctacagagtggaagatatacaagagcgaaagaggctgagacatgggaatatgctttatataaatatatgtatttgtt 362  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  6586927 tgattttccaatacatccatcgtctacagagtagaagctatacaagagcgaa-gaggctgagacatgggaatatgctttatataaatatatgtatctgtt 6586829  T
Q  363 tgataagcaatttactttacctttcattcat 393  Q
    ||||||  |||||||||||||||||||||||    
T  6586828 tgataaaaaatttactttacctttcattcat 6586798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6730213 - 6730131
Alignment:
Q  1 tctttccccaacctttttcttttcccgacatggtataaaacatcgtattcttttcctttacatttaataatctatatatcaac 83  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6730213 tctttccccaaccttttgcttttcccgacatggtataaaacatcgtattcttttcctttacatttaataatctatgtatcaac 6730131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6649847 - 6649765
Alignment:
Q  1 tctttccccaacctttttcttttcccgacatggtataaaacatcgtattcttttcctttacatttaataatctatatatcaac 83  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  6649847 tctttccccaaccttttgcttttcccgacatggtataaaacatcgtattcttttcttttacatttaataatctatgtatcaac 6649765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 6591809 - 6591728
Alignment:
Q  1 tctttccccaacctttttcttttcccgacatggtataaaacatcgtattcttttcctttacatttaataatctatatatcaa 82  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6591809 tctttccccaaccttttgcttttcccgacatgttataaaacatcgtattcttttcctttacatttaataatctatgtatcaa 6591728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6617501 - 6617419
Alignment:
Q  1 tctttccccaacctttttcttttcccgacatggtataaaacatcgtattcttttcctttacatttaataatctatatatcaac 83  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  6617501 tctttccccaaccttttgcttttcccgacatgttataaagcatcgtattcttttcctttacatttaataatctatgtatcaac 6617419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 6591653 - 6591585
Alignment:
Q  97 aatggtaagaggcaaagccccaacccaatttggttgtgggatttttactttagtatcaactttatctac 165  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  6591653 aatggtaagaggcaaagcccccacccaattttgttgcgggatttttactttagtatcaactttatctac 6591585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 6617344 - 6617280
Alignment:
Q  101 gtaagaggcaaagccccaacccaatttggttgtgggatttttactttagtatcaactttatctac 165  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  6617344 gtaagaggcaaagccccaacccaattttgttgcgggatttttactttagtatcaactttatctac 6617280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 6649687 - 6649612
Alignment:
Q  97 aatggtaagaggcaaagccccaacccaatttggttgtgggatttttactttagtatcaactttatctacaaaacaat 173  Q
    |||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  6649687 aatggtaagaggcaaagccc-agcccaattttgttgcgggatttttactttagtatcaactttatctacaaaacaat 6649612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 6804546 - 6804464
Alignment:
Q  4 ttccccaacctttttcttttcccgacatggtataaaacatcgta---ttcttttcctttacatttaataatctatatatcaac 83  Q
    ||||||| | |||| |||||||| ||||| ||||||||||||||   |||| || |||||||||||||||||||| |||||||    
T  6804546 ttccccacctttttgcttttccccacatgttataaaacatcgtagttttctcttgctttacatttaataatctatgtatcaac 6804464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 6793653 - 6793618
Alignment:
Q  48 ttcttttcctttacatttaataatctatatatcaac 83  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6793653 ttcttttgctttacatttaataatctatatatcaac 6793618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 6594093 - 6594043
Alignment:
Q  36 taaaacatcgta---ttcttttcctttacatttaataatctatatatcaac 83  Q
    ||||||||||||   ||||||| |||| |||||||||||||||||||||||    
T  6594093 taaaacatcgtagttttcttttgctttgcatttaataatctatatatcaac 6594043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 263 - 393
Target Start/End: Original strand, 1849 - 1978
Alignment:
Q  263 tgattttccaatacattcatcgtctacagagtggaagatatacaagagcgaaagaggctgagacatgggaatatgctttatataaatatatgtatttgtt 362  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||    
T  1849 tgattttccaatacatccatcgtccacagagtggaagatatacaagagcgaa-gagactaagacatgggaatatgctttatataaatatatgtatttgtt 1947  T
Q  363 tgataagcaatttactttacctttcattcat 393  Q
    |||||||||||||||||||||||||||||||    
T  1948 tgataagcaatttactttacctttcattcat 1978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6819 - 6737
Alignment:
Q  1 tctttccccaacctttttcttttcccgacatggtataaaacatcgtattcttttcctttacatttaataatctatatatcaac 83  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  6819 tctttccccaaccttttgcttttcccgacatgttataaagcatcgtattcttttcctttacatttaataatctatgtatcaac 6737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 6662 - 6598
Alignment:
Q  101 gtaagaggcaaagccccaacccaatttggttgtgggatttttactttagtatcaactttatctac 165  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  6662 gtaagaggcaaagccccaacccaattttgttgcgggatttttactttagtatcaactttatctac 6598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 40091093 - 40091170
Alignment:
Q  263 tgattttccaatacattcatcgtctacagagtggaagatatacaagagcgaaagaggctgagacatgggaatatgcttt 341  Q
    ||||| |||||||| | ||||| |||  ||||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  40091093 tgattgtccaatacctacatcgactatggagtggaagctatacaagagcg-aagaggttgagacatgggaatatgcttt 40091170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 2970 - 3005
Alignment:
Q  48 ttcttttcctttacatttaataatctatatatcaac 83  Q
    ||||||| ||||||||||||||||||||||||||||    
T  2970 ttcttttgctttacatttaataatctatatatcaac 3005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University