View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_38 (Length: 388)
Name: NF20479_low_38
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 974689 - 974347
Alignment:
| Q |
18 |
tattctttgttaactactataaagtagattttaatataagactatttgactatgtgttgcaggcaagaaagaatatagtcagcattttgagtcaactatt |
117 |
Q |
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| T |
974689 |
tattctttgtcaactactataaagtagattttaatataggactatttgactatgtgttgcaggcaagaaagaatatagtcagcattttgagtcaactatt |
974590 |
T |
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| Q |
118 |
aaaggaaagaagagcatccaatgaaattcacaaagacatgcttggttatttgatggaaagagaagaaaataggtacaaactaagtgatgaagaaatcatt |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
974589 |
aaaggaaagaagagcatccaatgaaactcacaaagacatgcttggttatttgatggaaagagaagaaaataagtacaaactaagtgatgaagaaatcatt |
974490 |
T |
|
| Q |
218 |
gatcaagtgattacacttatgtattctggttatgaaactgtttcaaccacatcaatgatggctgtgaagtacctccatgaccatcccaaagctcttgaag |
317 |
Q |
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| T |
974489 |
gatcaagtgattacacttatgtattctggttatgaaactgtttcaaccacatcaatgatggctgtgaagtacctccatgaccatcccaaagctcttgaag |
974390 |
T |
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| Q |
318 |
aactaagagtgagtacaaaactccattatttccttaaacataa |
360 |
Q |
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| T |
974389 |
aactaagagtgagtacaaaactccattatttccttaagcataa |
974347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 27 - 360
Target Start/End: Complemental strand, 5589861 - 5589529
Alignment:
| Q |
27 |
ttaactactataaagtagattttaatataagactatttgactatgtgttgcaggcaagaaagaatatagtcagcattttgagtcaactattaaaggaaag |
126 |
Q |
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| T |
5589861 |
ttaactattataaagta--ttttaatatggtactatttcactatgtattgcaggcaaggaagaatatagtcagcattttgagtcaactaataaaggaaag |
5589764 |
T |
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| Q |
127 |
aagagcatccaatgaaattcacaaagacatgcttggttatttgatggaaagagaagaaaataggtacaaactaagtgatgaagaaatcattgatcaagtg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
5589763 |
aagagcatccaatgaaattcacaaagacatgcttggttgttggatggaaagagaagaaaataagtacaaactaagtgatgaagaaatcattgatctagtg |
5589664 |
T |
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| Q |
227 |
attacacttatgtattctggttatgaaactgtttcaaccacatcaatgatggctgtgaagtacctccatgaccatcccaaagctcttgaagaactaagag |
326 |
Q |
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| T |
5589663 |
attacacttatgtattctggttatgaaactgtttcaaccacttcaatgatggctgtgaaatacctccatgaccatcccaaagctcttgaagaacttagag |
5589564 |
T |
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| Q |
327 |
tgagtac-aaaactccattatttccttaaacataa |
360 |
Q |
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| T |
5589563 |
tgagtacaaaaactccattatttccttaaacataa |
5589529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 315
Target Start/End: Complemental strand, 5065702 - 5065580
Alignment:
| Q |
193 |
caaactaagtgatgaagaaatcattgatcaagtgattacacttatgtattctggttatgaaactgtttcaaccacatcaatgatggctgtgaagtacctc |
292 |
Q |
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|||| ||| |||||||||| | ||||||| | | |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
5065702 |
caaattaaatgatgaagaacttattgatctaatcattacaattatgtattctggttatgaaactatttcaactacatcaatgatggctgtaaagtacctg |
5065603 |
T |
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| Q |
293 |
catgaccatcccaaagctcttga |
315 |
Q |
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||||| ||||| |||| |||||| |
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| T |
5065602 |
catgatcatcctaaagttcttga |
5065580 |
T |
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