View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_4 (Length: 702)
Name: NF20479_low_4
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 1 - 684
Target Start/End: Complemental strand, 690506 - 689822
Alignment:
| Q |
1 |
ctgcaagtgagttcaaaattttataagtcgttatcaaattattagtattgtaaaaacaaagtccttataattaaaaggggtataaaacatttgattatca |
100 |
Q |
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| T |
690506 |
ctgcaagtgagttcaaaattttataagtcgttatcaa-ttattagtattgtaaaaacaaagtccttataattaaaaggggtataaaacatttgattatca |
690408 |
T |
|
| Q |
101 |
tataaaatattttttatttaacaacattataggattcaaaacttatagcatgcttaaagatataaaatcgtttaggttttaataacgtggattgcatgaa |
200 |
Q |
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| T |
690407 |
tataaaatattttttatttaacaacattataggattcaaaacttatagtatgcttaaagatataaaatcgtttaggttttaataacgtggattgcatgaa |
690308 |
T |
|
| Q |
201 |
accataaatatattttattgcatttcatttcattcaatactctacttttaatttccctgtaatttggaagatatggcatattcaatttctttctagatta |
300 |
Q |
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| T |
690307 |
accataaatatattttattgcatttcatttcattcaatactctacttttaatttcgctgtaatttggaagatatggcatattctatttctttctagatta |
690208 |
T |
|
| Q |
301 |
aatatcaaaaca--gaggaaaggttattgctttacaatcagaaatcttaccacccgggtctccttcaaatttttcaagcaaaaagtactctatggttgca |
398 |
Q |
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| T |
690207 |
aatatcaaaacaaagaggaaaggttattgctttacaatcagaaatcttaccacccgggtctccttcaaatttttcaagcaaaaagtactctatggttgca |
690108 |
T |
|
| Q |
399 |
taaacattgttgttgtgacaccctgtgcatgctccttttaacactttaattctctgtccatgactccatgtcttttcctttctcttcagaacccgatgaa |
498 |
Q |
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| T |
690107 |
taaacattgttgttgtgacaccctgggcatgctccttttaacactttaattctctgtccatgactccatgtcttttcctttctcttcagaacccgatgaa |
690008 |
T |
|
| Q |
499 |
ctctaacgacttcatgatagcaagaaaaacagaatcacaaaaaggaagattcaatttagtccaatagcagcaaatatatacattttaactacacaaaact |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
690007 |
ctctaacgacttcatgatagcaagaaaaacagaatcacaaaaaggaagattcaatttagtccaatagcagcaaatatatacattttaactacacaaaact |
689908 |
T |
|
| Q |
599 |
aaactagtgcaactgttttaatatacatcaaaattcacgcatcagaggattagcaaggtttctttgttaatatacatgggcatttt |
684 |
Q |
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| T |
689907 |
aaactagtgcaactgttttaatatacatcaaaattcacgcatcagaggattagcaaggtttctttgttaatatacatgggcatttt |
689822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 341 - 584
Target Start/End: Complemental strand, 657635 - 657392
Alignment:
| Q |
341 |
aatcttaccacccgggtctccttcaaatttttcaagcaaaaagtactctatggttgcataaacattgttgttgtgacaccctgtgcatgctccttttaac |
440 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||| |||||| |||||||| ||||| |
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| T |
657635 |
aatcttaccacccaggtctccttcaaaaccttcaagcaaaaagtactctatggttgcataaacatcgctgtagtgaaaccctgaacatgctccccttaac |
657536 |
T |
|
| Q |
441 |
actttaattctctgtccatgactccatgtcttttcctttctcttcagaacccgatgaactctaacgacttcatgatagcaagaaaaacagaatcacaaaa |
540 |
Q |
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| T |
657535 |
actttaattttttgtccatgacaccaagacttctcctttctcttcagaacccgatgaactctaatgacttcataggagtaagaaaaatagaatgagaaaa |
657436 |
T |
|
| Q |
541 |
aggaagattcaatttagtccaatagcagcaaatatatacatttt |
584 |
Q |
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|||||||| | |||||||| || ||||| ||||||||| ||||| |
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| T |
657435 |
aggaagatacgatttagtctaagagcagtaaatatataaatttt |
657392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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