View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_low_40 (Length: 382)
Name: NF20479_low_40
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 7547962 - 7548314
Alignment:
| Q |
11 |
attattctattatgattagcactagaattcgattttgccctttctctcaattcatcactcatgtctctcattcatcgatctctacctctttctccataaa |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7547962 |
attatcctattatgattagcactagaattcgattttgccctttctctcaattcatcgctcatgtctctcattcatcaatctctacctctttctccataaa |
7548061 |
T |
|
| Q |
111 |
tcttcagcaccatctcttctatctgttatggatctgaccatttccttcactgccattgttcttacaaccattgtgcaaaactacgtgtcgtcgttcacgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
7548062 |
tcttcagcaccatctcttctatctgttatggatctgaccatttccttcactgccatcgttcttacaaccattgtgcaaaactacgtgccgttgttcacgt |
7548161 |
T |
|
| Q |
211 |
ctccgtttcgtgattttatttcttctacacgacatgtttaagaatttggggttaaaatatataattaattataaggaagaagaaggttaacgaatggatt |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
7548162 |
ctccatttcgtgattttatttcttctacacgacatgtttaagaatttggggttaaaatatataattaattaaaaggaagaagaaggttaacaaatggatt |
7548261 |
T |
|
| Q |
311 |
ttatttcttctacactaatttcataattttaaccataatcaaaatccgattatttc |
366 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
7548262 |
ttat---ttctacactaatttcgtgattttaaccataatcaaaatccgtttatttc |
7548314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 10026542 - 10026896
Alignment:
| Q |
11 |
attattctattatgattagcactagaattcg-attttgccctttctctcaattcatcactcatgtctctcattcatcgatctctacctctttctccataa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| | | ||||||||||||| ||||| || |
|
|
| T |
10026542 |
attatcctattatgattagcactagaattcttattttgccctttctctcaattcatcgatgatgtctctcatccgt--atctctacctcttcctccacaa |
10026639 |
T |
|
| Q |
110 |
atcttcagcaccatctcttctatctgttatggatctgaccatttccttcactgccattgttcttacaaccattgtgcaaaactacgtgtcgtcgttcacg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
10026640 |
atcttcagcaccatctcttctatctgttatggatctgacaatatccttcactgcttccgttcttacaaccattgtgcaaaactacgtgccaccgttcacg |
10026739 |
T |
|
| Q |
210 |
tctccgtttcgtgattttatttcttctacacgacatgtttaagaatttggggttaaaatatataattaattataaggaagaagaaggttaacgaatggat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10026740 |
tctccgtttcgtgattttatttcttctacactacatgtttaagaattggggtttaaaatatattattaattataaggaagaagaaggttaacgaatggat |
10026839 |
T |
|
| Q |
310 |
tttatttcttctacactaatttcataattttaaccataatcaaaatccgattatttc |
366 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
10026840 |
tttatttcttccacaccaattttgagattttaaccataatcaaaatccgtttatttc |
10026896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 47038689 - 47038738
Alignment:
| Q |
83 |
catcgatctctacctctttctccataaatcttcagcaccatctcttctat |
132 |
Q |
| |
|
|||||| ||| ||||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
47038689 |
catcgacctcaacctcttcctccataactcttcaacaccatctcttctat |
47038738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 16567563 - 16567399
Alignment:
| Q |
202 |
cgttcacgtctccgtttcgtgattttatttcttctacacgacatgtttaagaatttggggttaaaatatataattaattataaggaagaagaaggttaac |
301 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
16567563 |
cgttcacgtctccgttttgtgattttatttcttttacacgacatgtttaagaattgggggttaaaatatataattaattataaggaagaagaagattgac |
16567464 |
T |
|
| Q |
302 |
gaatggattttatttcttctacactaatttcataattttaaccataatcaaaatccgattatttc |
366 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
16567463 |
aaatggattttatttcttctacaccaatttcatgattttaaccataatcaaaatctgtttatttc |
16567399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 16567720 - 16567566
Alignment:
| Q |
11 |
attattctattatgattagcactagaattcg-attttgccctttctctcaattcatcactcatgtctctcattcatcgatctctacctctttctccataa |
109 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
16567720 |
attatcctattatgattagcaatagaattcttattttaccctttctctcaattcatcgctcatgtctctcatccatcgatctctacctcttcctccataa |
16567621 |
T |
|
| Q |
110 |
atcttcagcaccatctcttctatctgttatggatctgaccatttccttcactgcc |
164 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16567620 |
atcttcagcaccatctcttctatatgttatggatctgaccatttccttcactgcc |
16567566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 18665354 - 18665394
Alignment:
| Q |
92 |
ctacctctttctccataaatcttcagcaccatctcttctat |
132 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
18665354 |
ctacctctttctccataactcttcaaccccatctcttctat |
18665394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 44763996 - 44763947
Alignment:
| Q |
83 |
catcgatctctacctctttctccataaatcttcagcaccatctcttctat |
132 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
44763996 |
catcgacctctacctcttcctccataactcttcaacaccatctcttctat |
44763947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 50004826 - 50004761
Alignment:
| Q |
83 |
catcgatctctacctctttctccataaatcttcagcaccatctcttctatctgttatggatctgac |
148 |
Q |
| |
|
|||||| ||||||||||| | |||||| | |||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
50004826 |
catcgacctctacctcttcccccataacttttcaacgccatctcttctatctgttacggatctgac |
50004761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 4951565 - 4951622
Alignment:
| Q |
90 |
ctctacctctttctccataaatcttcagcaccatctcttctatctgttatggatctga |
147 |
Q |
| |
|
||||||||||| |||||||| | |||| | ||||||||||||| ||||| |||||||| |
|
|
| T |
4951565 |
ctctacctcttcctccataacttttcaacgccatctcttctatttgttacggatctga |
4951622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University