View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_42 (Length: 374)
Name: NF20479_low_42
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 3216844 - 3217198
Alignment:
| Q |
18 |
cgtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216844 |
cgtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcc |
3216943 |
T |
|
| Q |
118 |
cctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216944 |
cctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattc |
3217043 |
T |
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| Q |
218 |
caattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3217044 |
caattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgagaggat |
3217143 |
T |
|
| Q |
318 |
cttttctggtcgaattgatagaacctcctccttctcttctagagcctttgcttct |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3217144 |
gttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttct |
3217198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 3202931 - 3203276
Alignment:
| Q |
18 |
cgtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcc |
117 |
Q |
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| T |
3202931 |
cgtgtgagttccgtggccaacataatcgtatggaagggatgaattt---------acgatgttccttgctccaatgatcttcttgttacaaatcctctcc |
3203021 |
T |
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| Q |
118 |
cctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattc |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| ||||||||||||||| |||| |
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| T |
3203022 |
cctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcattc |
3203121 |
T |
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| Q |
218 |
caattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggat |
317 |
Q |
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||||||||||||||||||| ||||||||||| ||| ||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| | || |
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| T |
3203122 |
caattatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgagttgtgtgtaatgagaaaat |
3203221 |
T |
|
| Q |
318 |
cttttctggtcgaattgatagaacctcctccttctcttctagagcctttgcttct |
372 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||||||||| |||| |||||| |
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| T |
3203222 |
cttttctggtcgaattgacagaacctcctcattctcttctagaaccttggcttct |
3203276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 3208906 - 3209249
Alignment:
| Q |
19 |
gtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttccc |
118 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||| ||| ||||| || ||| ||||||||||||||| |||||||||||||||||| |||| |
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| T |
3208906 |
gtgtgagttccatggccaacatcatcgtatggaagggatgaattt---------acaaaggtccttgctccaatgatcttcttgttacaaatcctctccc |
3208996 |
T |
|
| Q |
119 |
ctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattcc |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||| |||||||||||| | |||||| |
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| T |
3208997 |
ctgtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattcc |
3209096 |
T |
|
| Q |
219 |
aattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggatc |
318 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||| || ||||| | ||||| |||||||||||||||| ||||||||||| ||||||||| || |
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| T |
3209097 |
aattatgatccctttaccttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacatt |
3209196 |
T |
|
| Q |
319 |
ttttctggtcgaattgatagaacctcctccttctcttctagagcctttgcttc |
371 |
Q |
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|| || | ||| |||||||||||||||| ||||||||||||||||| ||||| |
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| T |
3209197 |
ttctccagccgagttgatagaacctcctcattctcttctagagccttggcttc |
3209249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 3177934 - 3177882
Alignment:
| Q |
122 |
tgaattcacagtggccattccattttgcaggtggagagggcattccctcgtca |
174 |
Q |
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|||||||||| ||||| ||||||||||||||||| | |||||||| |||||| |
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| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtggcggcggcattccttcgtca |
3177882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 3232106 - 3232158
Alignment:
| Q |
121 |
gtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtc |
173 |
Q |
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||||||||||| ||||| ||||||||||||||||| | |||||||| ||||| |
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| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtggtggcggcattccttcgtc |
3232158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 3240906 - 3240958
Alignment:
| Q |
122 |
tgaattcacagtggccattccattttgcaggtggagagggcattccctcgtca |
174 |
Q |
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|||||||||| ||||| ||||||||||||||||| | |||||||| |||||| |
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| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtggcggcggcattccttcgtca |
3240958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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