View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_43 (Length: 369)

Name: NF20479_low_43
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_43
NF20479_low_43
[»] chr5 (5 HSPs)
chr5 (123-317)||(13381192-13381386)
chr5 (10-114)||(13381417-13381521)
chr5 (264-317)||(12080438-12080491)
chr5 (263-317)||(33163805-33163858)
chr5 (289-317)||(10053882-10053910)
[»] chr1 (1 HSPs)
chr1 (262-317)||(15964391-15964446)
[»] chr3 (6 HSPs)
chr3 (264-353)||(7758139-7758228)
chr3 (269-317)||(47871279-47871327)
chr3 (262-317)||(38392330-38392385)
chr3 (263-317)||(32180454-32180508)
chr3 (264-317)||(7568430-7568483)
chr3 (264-317)||(42664026-42664079)
[»] chr2 (6 HSPs)
chr2 (270-317)||(41644164-41644211)
chr2 (262-317)||(6178065-6178120)
chr2 (263-310)||(39788313-39788360)
chr2 (264-317)||(18059066-18059119)
chr2 (313-353)||(17244834-17244874)
chr2 (262-294)||(18947312-18947344)
[»] chr7 (1 HSPs)
chr7 (262-314)||(7743224-7743276)
[»] chr4 (2 HSPs)
chr4 (263-317)||(2266560-2266614)
chr4 (264-317)||(17612625-17612678)
[»] chr8 (1 HSPs)
chr8 (264-317)||(7291010-7291063)
[»] chr6 (1 HSPs)
chr6 (264-317)||(34994122-34994175)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 123 - 317
Target Start/End: Complemental strand, 13381386 - 13381192
Alignment:
Q  123 ggggtcaaaaaacctctactttataaaatctatttaacaaaattaccaaaatacactaattaatacaagtacaaatcaagatacgttttgaataaaataa 222  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13381386 ggggtcaaaaaacctctacttgaaaaaatctatttaacaaaattaccaaaatacactaattaatacaagtacaaatcaagatacgttttgaataaaataa 13381287  T
Q  223 agggcacttctacggtgcggtcattaaactaannnnnnnagaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||||| |||||||||||||||| ||||||||       |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  13381286 agggcaattctacggtgcggtcagtaaactaactattttagaaaaattattttgtttagtcaatagtataactgttgatgtcatgtcagctagtg 13381192  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 13381521 - 13381417
Alignment:
Q  10 agaagaagtgggatgctctcagccttacttcagccacatttcctaatccgttcatcttgcattcaaatatgagaagaagatcaaaatatgtatgtacaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13381521 agaagaagtgggatgctctcagccttacttcagccacatttcctaatccgttcatcttgcattcaaatatgagaagaagatcaaaatatgtatgtacaac 13381422  T
Q  110 taata 114  Q
    |||||    
T  13381421 taata 13381417  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 12080438 - 12080491
Alignment:
Q  264 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  12080438 aaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtg 12080491  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 33163858 - 33163805
Alignment:
Q  263 gaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||||||||||| |||||||| ||| ||||||||  |||||||||||||||||||    
T  33163858 gaaaaattattt-gtttagtcaatagtataactgccgatgtcatgtcagctagtg 33163805  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 10053910 - 10053882
Alignment:
Q  289 tataactgttgatgtcatgtcagctagtg 317  Q
    |||||||||||||||||||||||||||||    
T  10053910 tataactgttgatgtcatgtcagctagtg 10053882  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 15964446 - 15964391
Alignment:
Q  262 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||    
T  15964446 agaaaaattattttgtttagccaatagtataactgtcgatgtcatgtcagctagtg 15964391  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 7758139 - 7758228
Alignment:
Q  264 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtggatctctctaaagctaaactttaccttattacaaat 353  Q
    |||| ||||||||||||||| ||| ||||| ||  ||| ||||||||||||||||| | ||||||| |||| ||||| ||| ||||||||    
T  7758139 aaaagttattttgtttagtcaatagtataattgccgatatcatgtcagctagtggagcactctaaaactaagctttatctttttacaaat 7758228  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 47871327 - 47871279
Alignment:
Q  269 ttattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    ||||||| ||||| | |||||||||||||||||||||||||| ||||||    
T  47871327 ttattttatttagccaataatataactgttgatgtcatgtcaactagtg 47871279  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 38392330 - 38392385
Alignment:
Q  262 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||||| ||||||||||||| | |||||||||||| |||| |||| ||||||||||    
T  38392330 agaaaagttattttgtttagccaataatataactgctgatatcatatcagctagtg 38392385  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 32180454 - 32180508
Alignment:
Q  263 gaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    ||||| ||||||||||||| | ||| |||||||| |||||||||||| |||||||    
T  32180454 gaaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtg 32180508  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 7568430 - 7568483
Alignment:
Q  264 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||| ||||||||||||||| ||| ||||||||| ||| | |||||||||||||    
T  7568430 aaaagttattttgtttagtcaatagtataactgtcgattttatgtcagctagtg 7568483  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 42664026 - 42664079
Alignment:
Q  264 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||| ||||||| ||||||| ||| ||||  |||||||||||||||||||||||    
T  42664026 aaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtg 42664079  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 41644211 - 41644164
Alignment:
Q  270 tattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||||||||||| | ||||||||| |||||||||||||||||||||||    
T  41644211 tattttgtttagccaataatataattgttgatgtcatgtcagctagtg 41644164  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 6178120 - 6178065
Alignment:
Q  262 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||||| ||||||||||||| | ||| ||||||||  |||||||||||||||||||    
T  6178120 agaaaagttattttgtttagccaatagtataactgccgatgtcatgtcagctagtg 6178065  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 39788313 - 39788360
Alignment:
Q  263 gaaaaattattttgtttagtcgataatataactgttgatgtcatgtca 310  Q
    |||||| |||||||||||||| ||| ||||||||| ||||||||||||    
T  39788313 gaaaaagtattttgtttagtcaatagtataactgtcgatgtcatgtca 39788360  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 18059066 - 18059119
Alignment:
Q  264 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||| ||||||||||||||| ||| ||||| ||| |||||||||| ||||||||    
T  18059066 aaaagttattttgtttagtcaatagtataattgtcgatgtcatgttagctagtg 18059119  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 17244834 - 17244874
Alignment:
Q  313 tagtggatctctctaaagctaaactttaccttattacaaat 353  Q
    ||||||| | ||||||| |||||||||||||||||||||||    
T  17244834 tagtggaccactctaaaactaaactttaccttattacaaat 17244874  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 18947312 - 18947344
Alignment:
Q  262 agaaaaattattttgtttagtcgataatataac 294  Q
    |||||||||||||||||||||||||| ||||||    
T  18947312 agaaaaattattttgtttagtcgatagtataac 18947344  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 7743276 - 7743224
Alignment:
Q  262 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagcta 314  Q
    |||||| ||||||||||||||| ||| ||||||||| ||||||||||| ||||    
T  7743276 agaaaagttattttgtttagtcaatagtataactgtcgatgtcatgtcggcta 7743224  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 2266560 - 2266614
Alignment:
Q  263 gaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    ||||| ||||||||||||| | ||| ||||||||| |||| ||||||||||||||    
T  2266560 gaaaagttattttgtttagccaatagtataactgtcgatgccatgtcagctagtg 2266614  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 17612678 - 17612625
Alignment:
Q  264 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||| ||||||| ||||| | ||| ||||||||| |||||||||||||||||||    
T  17612678 aaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtg 17612625  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 7291063 - 7291010
Alignment:
Q  264 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||||||||||||||||| | ||| ||||||||| |||||||| ||| ||||||    
T  7291063 aaaaattattttgtttaggcaatagtataactgtcgatgtcatatcaactagtg 7291010  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 34994175 - 34994122
Alignment:
Q  264 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 317  Q
    |||||||||||||||||| | |||  |||| ||||||||||||||| |||||||    
T  34994175 aaaaattattttgtttagccaatataataagtgttgatgtcatgtcggctagtg 34994122  T

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