View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_45 (Length: 366)
Name: NF20479_low_45
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_45 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 6363178 - 6362819
Alignment:
| Q |
1 |
cagcactagatctcaattcgctcccttaaattatagggttgggtatctttaaaatatgtgaataggtaaaat------------tgattaacgtcaaaca |
88 |
Q |
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| T |
6363178 |
cagcactagatctcaattcgctccctaaaattatagggttgggtatctttaaaatatgtgaataggtaaaatagccgttgagtttgattaacgtcaaaca |
6363079 |
T |
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| Q |
89 |
aattgattcttctattaagtgtagatatagaaaattgttgcctatgtatgatatgtgaataggccaaatactatgtaacaaactcacatggttagttact |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6363078 |
aattgattcttctattaagtgtagatatagaaaattgttgcctatgtatgatatgtgaataggccaaatactatgtaacaaactcacatggttagttact |
6362979 |
T |
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| Q |
189 |
tgcattataagcaaatcattaacctataagcaaactatgttgacattgttctgattggcacctttgacatagattccatgctcaactgtgcattatgagt |
288 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6362978 |
tgcattataagcaaatcattaacttataagcaaactatgttgacattgttctgattggcacctttgacatagattccatgctcaactgtgcattatgagt |
6362879 |
T |
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| Q |
289 |
agccattttccttgagaaactcatcaattctaattataggctcttggtgcttgctttaag |
348 |
Q |
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| T |
6362878 |
agccattttccttgagaaactcatcaattctaattataggctcttggtgcttgctttaag |
6362819 |
T |
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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 12448126 - 12448243
Alignment:
| Q |
198 |
agcaaatcattaacctataagcaaactatgttgacattgttctgattggcacctttgacatagattccatgctcaactgtgcattatgagtagccatttt |
297 |
Q |
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|||||||||| ||| |||| ||||||||||| | ||||||| ||||| |||||||||||| ||| ||||||||| |||||||| |||||||||||||| |
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| T |
12448126 |
agcaaatcatcaacatataggcaaactatgtcaatgttgttcttattggtacctttgacataaatttcatgctcaattgtgcattctgagtagccatttt |
12448225 |
T |
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| Q |
298 |
ccttgagaaactcatcaa |
315 |
Q |
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| T |
12448226 |
tcttgagaaattcatcaa |
12448243 |
T |
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Target: scaffold0929 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 1752 - 1690
Alignment:
| Q |
10 |
atctcaattcgctcccttaaattatagggttgggtatctttaaaatatgtgaataggtaaaat |
72 |
Q |
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| T |
1752 |
atctcaattcgctcccttaaataatagggtttggtatctttaaagtatgtgaataggtaaaat |
1690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 348
Target Start/End: Original strand, 36073429 - 36073579
Alignment:
| Q |
201 |
aaatcattaacctataagcaaactatgttgacattgttctgattggcacctttga-catagattccatgctcaactgtgcattatgagtagccattttcc |
299 |
Q |
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||||||| ||| |||||||||| |||||| | ||||||||||| | |||| | ||||||||||||||||||||||||||| |||||||| ||||| | |
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| T |
36073429 |
aaatcatcaacatataagcaaattatgttaatgttgttctgatttgtgccttccaacatagattccatgctcaactgtgcattttgagtagctattttgc |
36073528 |
T |
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| Q |
300 |
ttgagaaactcatcaattct--aattataggctcttggtgcttgctttaag |
348 |
Q |
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| T |
36073529 |
ttgagaaaatcatatgttcttatattccaggctcttggtgcttgctttaag |
36073579 |
T |
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