View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_49 (Length: 357)
Name: NF20479_low_49
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_49 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 4143536 - 4143890
Alignment:
| Q |
1 |
taatattatacattgtgaagagaacgacgatagagaatattgtagaattcaacaggtttgcaataaatcaaaagactttcatcagctgtaatttcttctt |
100 |
Q |
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| T |
4143536 |
taatattatacattgtgaagagaacgacgatagagaatattgtagaattcaacaggtttgcaataaatcaaaagactttcatcagctgtaatttcttctt |
4143635 |
T |
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| Q |
101 |
caccggaattatgcaccggtgaattttgccggcacatgttgaattcttcaacctacaaacaaacacaaaatcaacttcaattaaacatacattgttacac |
200 |
Q |
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| T |
4143636 |
caccggaattatgcaccggtgaattttgccggcacatgttgaattcttcaacctacaaacaaacacaaaatcaacttcaattaaacatacattgttacac |
4143735 |
T |
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| Q |
201 |
gcaattgaagtaatgagctgaaacacaattaggttaaacgaatattgcacagctgaaaacaaagaaattcatgagagaggaagacttacagagaagagag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143736 |
gcaattgaagtaatgagctgaaacacaattaggttaaacgaatattg--cagctgaaaacaaagaaattcatgagagaggaagacttacagagaagagag |
4143833 |
T |
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| Q |
301 |
aaaatgcgaagaagttcttggtcgatctggcggagaagggaagagcatggcaccgtc |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143834 |
aaaatgcgaagaagttcttggtcgatctggcggagaagggaagagcatggcaccgtc |
4143890 |
T |
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