View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_low_50 (Length: 357)
Name: NF20479_low_50
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 3181600 - 3181286
Alignment:
| Q |
1 |
atgaactaatagataaatggatcataatgaaaaatttgcctgatgaggtaaatatttcatgtcac--tacaacaagagaataacatatcttaattgaaat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
3181600 |
atgaactaatagataaatggatcataatgaaaaatttgcctgatgaggtaaatatttcatgtcactatacaacatgagaataacatatcttaattgaaat |
3181501 |
T |
|
| Q |
99 |
tgttaggttaaactatataaaacgaggaatgaccctatgtaaccttaggttatatatagttggagaatttatttgtttgaatannnnnnnnagatttgtt |
198 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
3181500 |
tgttaggttaaac--tataaaacgaggaatgaccctatgtaaccgtaggttatatatagttggagaatttttttgtttgaatattttttttagatttgtt |
3181403 |
T |
|
| Q |
199 |
aggcatgtttgaagcttgttaaagttagttccaagttgatttgaattactttaacaaattccacataaaattaagttttgctaacaagtgttttaaggac |
298 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | || |||| || |
|
|
| T |
3181402 |
aggcatggttgaagcttgttaaagttagttccaagttgatttgaattactttaacaaattccaaataaaattaggttttgctaacaaatattctaagaac |
3181303 |
T |
|
| Q |
299 |
aatatttaaaaaaccta |
315 |
Q |
| |
|
||| ||||| ||||||| |
|
|
| T |
3181302 |
aatgtttaagaaaccta |
3181286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University