View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_51 (Length: 355)

Name: NF20479_low_51
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_51
NF20479_low_51
[»] chr3 (6 HSPs)
chr3 (11-335)||(35976384-35976708)
chr3 (11-341)||(34376931-34377256)
chr3 (204-341)||(12879049-12879187)
chr3 (22-82)||(12879197-12879257)
chr3 (140-235)||(10378483-10378581)
chr3 (153-194)||(34796568-34796609)
[»] chr2 (2 HSPs)
chr2 (151-194)||(31326590-31326633)
chr2 (153-193)||(25971319-25971359)
[»] chr1 (2 HSPs)
chr1 (286-339)||(28892978-28893032)
chr1 (153-194)||(22523108-22523149)
[»] chr6 (1 HSPs)
chr6 (287-339)||(7889850-7889902)
[»] chr7 (1 HSPs)
chr7 (153-194)||(20937119-20937160)
[»] chr8 (1 HSPs)
chr8 (153-193)||(23123706-23123746)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 35976384 - 35976708
Alignment:
Q  11 cataggccgttgttgatgtttgtggctgaaccaatggtcccttactctaatattcatagatggtattggaataatcctacgttagttttgtttgctcttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35976384 cataggccgttgttgatgtttgtggctgaaccaatggtcccttactctaatattcatagatggtattggaataatcctacgttagttctgtttgctcttc 35976483  T
Q  111 gcaataggtggcataattgcaatcaaggcggcatttccactttcatctcatatttttctcgaagggaattgttgtgcggataagcttgtgaatcatggtc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35976484 gcaataggtggcataattgcaatcaaggcggcatttccactttcatctcatatttttctcgaagggaattgttgtgtggataagcttgtgaatcatggtc 35976583  T
Q  211 acaacttggatgttgtttttggtgggaggctttcccattgtttatgagagatgatttttatagagacaatacggattttccgttatccttaggtctcttg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35976584 acaacttggatgttgtttttggtgggaggctttcccattgtttatgagagatgatttttatagagacaacacggattttccgttatccttaggtctcttg 35976683  T
Q  311 ctttcattttggccttttgtttcct 335  Q
    |||||||||||||||||||||||||    
T  35976684 ctttcattttggccttttgtttcct 35976708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 34377256 - 34376931
Alignment:
Q  11 cataggccgttgttgatgtttgtggctgaaccaatggtcccttactctaatattcatagatggtattggaataatcctacgttagttttgtttgctcttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||| ||||||||||||    
T  34377256 cataggccgttgttgatgtttgtggctgaaccaatggtcccttactctaatattcatagatagtattggaat---cctacgttagttctgtttgctcttc 34377160  T
Q  111 gcaataggtggcataattgcaatcaaggcggcatttccactttcatctcatatttttctcgaagggaattgttgtgcggataagcttgtgaatcatggtc 210  Q
    |||||||||| |||||| | |||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||| | |||||||||    
T  34377159 gcaataggtgccataatggtaatcaaggcgacatttccactttcatctcatattttctccgaagggaattgttgtgcggataagcttgcgcatcatggtc 34377060  T
Q  211 acaacttggatgttgtttttggtgggaggctttcccattgtttatgagagatgatttttatagagaca-atacggattttccgttatccttaggtctctt 309  Q
    |||    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||  ||||||||||||||||||||||||||||||    
T  34377059 aca---gggatgttgtttttggtgggaggcttccccattgtttattagagatgattttgttagagacatgtacggattttccgttatccttaggtctctt 34376963  T
Q  310 gctttcattttggccttttgtttcctgttttt 341  Q
    |||||  ||||||| |||||||||||||||||    
T  34376962 gctttgtttttggctttttgtttcctgttttt 34376931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 204 - 341
Target Start/End: Complemental strand, 12879187 - 12879049
Alignment:
Q  204 catggtcacaacttggatgttgtttttggtgggaggctttcccattgtttatgagagatgatttttatagagaca-atacggattttccgttatccttag 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  12879187 catggtcacaacttggatgttgtttttggtgggaggctttcccattgtttattagagatgatttttatagagacatatacagattttccgttatccttag 12879088  T
Q  303 gtctcttgctttcattttggccttttgtttcctgttttt 341  Q
     ||||||||||| |||||||| |||||||||||||||||    
T  12879087 atctcttgctttgattttggcattttgtttcctgttttt 12879049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 12879257 - 12879197
Alignment:
Q  22 gttgatgtttgtggctgaaccaatggtcccttactctaatattcatagatggtattggaat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12879257 gttgatgtttgtggctgaaccaatggtcccttactctaatattcatagatggtattggaat 12879197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 10378581 - 10378483
Alignment:
Q  140 ggcatttcca--ctttcatctcatatttttctcgaagggaattgttgtgcggataagcttgtgaatcatggtcacaacttggatgttgtt-tttggtgg 235  Q
    ||||||||||  ||||||||||||||||||| |||||| ||||||||| | |||||| | |  ||||||||||||||||||| || |||| ||||||||    
T  10378581 ggcatttccatcctttcatctcatatttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcacaacttggttgatgttatttggtgg 10378483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 34796568 - 34796609
Alignment:
Q  153 tcatctcatatttttctcgaagggaattgttgtgcggataag 194  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  34796568 tcatctcatatttttcgtgaaggtaattgttgtgcggataag 34796609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 31326633 - 31326590
Alignment:
Q  151 tttcatctcatatttttctcgaagggaattgttgtgcggataag 194  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  31326633 tttcatctcatatttttcgcgaaggaaattgttgtgcggataag 31326590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 25971359 - 25971319
Alignment:
Q  153 tcatctcatatttttctcgaagggaattgttgtgcggataa 193  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  25971359 tcatctcatatttttcgtgaaggtaattgttgtgcggataa 25971319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 28893032 - 28892978
Alignment:
Q  286 ttttccgttatccttaggtctcttgcttt-cattttggccttttgtttcctgttt 339  Q
    ||||| |||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  28893032 ttttctgttatcattaggtctcttgctttgcattttggctttttgtttcctgttt 28892978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 22523149 - 22523108
Alignment:
Q  153 tcatctcatatttttctcgaagggaattgttgtgcggataag 194  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  22523149 tcatctcatatttttcgtgaaggtaattgttgtgcggataag 22523108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 7889902 - 7889850
Alignment:
Q  287 tttccgttatccttaggtctcttgctttcattttggccttttgtttcctgttt 339  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||| ||||||    
T  7889902 tttccgttatccttaggtctctagctttgtttttggctttttgttttctgttt 7889850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 20937160 - 20937119
Alignment:
Q  153 tcatctcatatttttctcgaagggaattgttgtgcggataag 194  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  20937160 tcatctcatatttttcgtgaaggtaattgttgtgcggataag 20937119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 23123706 - 23123746
Alignment:
Q  153 tcatctcatatttttctcgaagggaattgttgtgcggataa 193  Q
    |||||||||||||||| |||||| ||||| |||||||||||    
T  23123706 tcatctcatatttttcgcgaaggtaattgctgtgcggataa 23123746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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