View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_52 (Length: 352)
Name: NF20479_low_52
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_52 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 55958322 - 55958657
Alignment:
| Q |
17 |
agtcctttggtttcattccatcaggaagttcccaattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagccaaacaaaatttctgg |
116 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55958322 |
agtcctctggtttcattccattaggaagttcccaattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagccaaacaaaattcctgg |
55958421 |
T |
|
| Q |
117 |
acacattcttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55958422 |
acacattcttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatatttactgtcatgaaacctctca |
55958521 |
T |
|
| Q |
217 |
ggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaacta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55958522 |
ggtataaacttctctgcatcataccaatatttgggatctcttcacattgcccaagcatttactaacacattagtctttattggtatttcatatccaccta |
55958621 |
T |
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| Q |
317 |
tgttgcatgcttccctgcattatcttataagcaaag |
352 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
55958622 |
tgttgcatgcttccctgcattctcttataagcaaag |
55958657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 55954769 - 55955101
Alignment:
| Q |
17 |
agtcctttggtttcattccatcaggaagttcccaattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagccaaacaaaatttctgg |
116 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||| | || |
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| T |
55954769 |
agtcctctggtttcattccattaggaagttcccaattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccgg |
55954868 |
T |
|
| Q |
117 |
acacattcttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctca |
216 |
Q |
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|||||||||||||||||| |||||||| ||||| |||||| |||||||||| |||| |||||||||||||||| | |||| |||| |||||| ||| |
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| T |
55954869 |
acacattcttcttcctcccccaaaaggcatgtaatcaaagctattattattg---ttcaatttattaaaatcaaaaccagtactatcattaaacctttca |
55954965 |
T |
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| Q |
217 |
ggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaacta |
316 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||| ||| |
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| T |
55954966 |
ggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatcta |
55955065 |
T |
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| Q |
317 |
tgttgcatgcttccctgcattatcttataagcaaag |
352 |
Q |
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||||||| ||||||||||||| |||| |||||||| |
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| T |
55955066 |
tgttgcaagcttccctgcattctcttggaagcaaag |
55955101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 352
Target Start/End: Original strand, 41795542 - 41795867
Alignment:
| Q |
24 |
tggtttcattccatcaggaagttcccaattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagccaaacaaaatttctggacacatt |
123 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||| | ||||| | ||||||||| |
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| T |
41795542 |
tggtttcattccattaggaagttcccaattgaagtgatgcaacaatgcagctagaggaagctcaatgttagctaagccaagcgaaattcccggacacatt |
41795641 |
T |
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| Q |
124 |
cttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctcaggtataa |
223 |
Q |
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||||||||| | | | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| | |||||| |
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| T |
41795642 |
cttcttccttccctagaagggatgtattcaaagttat---tattactattcactttattaaattcaaaatctttactgtcctgaaacctcttatgtataa |
41795738 |
T |
|
| Q |
224 |
acttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgttgca |
323 |
Q |
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| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
41795739 |
aattatctgcatcatatcaatatttgggatctcttccgattgcccatgcatttactatcacactagtctttataggtatttcatatccacctatgttgca |
41795838 |
T |
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| Q |
324 |
tgcttccctgcattatcttataagcaaag |
352 |
Q |
| |
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||||||||||||| |||| |||||||| |
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| T |
41795839 |
cgcttccctgcattctcttggaagcaaag |
41795867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 27 - 347
Target Start/End: Complemental strand, 12268576 - 12268262
Alignment:
| Q |
27 |
tttcattccatcaggaagttcccaattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagccaaacaaaatttctggacacattctt |
126 |
Q |
| |
|
||||||| ||| ||||| || ||| | |||||| || | ||| ||||| ||||||||||||||||| ||||| |||||||||| | |||||||||||||| |
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| T |
12268576 |
tttcatttcattaggaattttccagtcgaagtggtaaagtaaggcagccagaggaagctcaatatttgctaaaccaaacaaaactcctggacacattctt |
12268477 |
T |
|
| Q |
127 |
cttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctcaggtataaact |
226 |
Q |
| |
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||||||||||||||||||||||| | |||| |||||| ||| ||||||||||||||||||| | || | ||||||||||||||||||||||||| |
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| T |
12268476 |
cttcctcctccaaaagggatgtactgaaagctattatcatt------cactttattaaaatcaaaaccagtattatcatgaaacctctcaggtataaact |
12268383 |
T |
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| Q |
227 |
tctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgttgcatgc |
326 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||| ||||||| || | |||||||||||| |||||||||||||| ||||||||||||| |
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| T |
12268382 |
tctctgcatcagaccaatgattgggatctcttccaattgcccatgcatttaatattaaattagtctttataggtatttcatatcctcctatgttgcatgc |
12268283 |
T |
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| Q |
327 |
ttccctgcattatcttataag |
347 |
Q |
| |
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||||||||||| |||| |||| |
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| T |
12268282 |
ttccctgcattctcttgtaag |
12268262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 350
Target Start/End: Original strand, 12425109 - 12425426
Alignment:
| Q |
27 |
tttcattccatcaggaagttcccaattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagccaaacaaaatttctggacacattctt |
126 |
Q |
| |
|
||||||| ||| ||||| || ||| | |||||| || | ||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| |
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| T |
12425109 |
tttcatttcattaggaattttccagtcgaagtggtaaagtaatgcagccagaggaagctcaatatttgccaagccaaacaaaattcctggacacattctt |
12425208 |
T |
|
| Q |
127 |
cttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctcaggtataaact |
226 |
Q |
| |
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||||||||||||||||||| || | |||| |||||| ||| ||||||||||||||||||| | |||| |||||||||||||| |||||||||| |
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| T |
12425209 |
cttcctcctccaaaagggaaatactgaaagctattatcatt------cactttattaaaatcaaaaccagtactatcatgaaacctctccggtataaact |
12425302 |
T |
|
| Q |
227 |
tctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgttgcatgc |
326 |
Q |
| |
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|||| |||||| |||||| || |||||||||||| |||||||| ||||||| || | ||||| |||| ||||||||||||||| |||||||||| || |
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| T |
12425303 |
tctcagcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtttttaaaggtatttcatatccacctatgttgcacgc |
12425402 |
T |
|
| Q |
327 |
ttccctgcattatcttataagcaa |
350 |
Q |
| |
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||||||||||| ||| || ||||| |
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| T |
12425403 |
ttccctgcattctctcatgagcaa |
12425426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 7141706 - 7141631
Alignment:
| Q |
202 |
tcatgaaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcattta |
277 |
Q |
| |
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|||| ||||||||| || |||||| |||| ||||||| ||||||||| ||||||||||| |||||||| ||||||| |
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| T |
7141706 |
tcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcattta |
7141631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 318
Target Start/End: Complemental strand, 7154471 - 7154360
Alignment:
| Q |
207 |
aaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttca |
306 |
Q |
| |
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||||||||| || || ||| |||| |||||| |||||||| ||||||||| ||| |||||| ||||||| | ||| ||||| ||| ||||||||||| |
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| T |
7154471 |
aaacctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttca |
7154372 |
T |
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| Q |
307 |
tatccaactatg |
318 |
Q |
| |
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|| ||| ||||| |
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| T |
7154371 |
taaccatctatg |
7154360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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