View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_56 (Length: 333)
Name: NF20479_low_56
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_56 |
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| [»] scaffold0662 (1 HSPs) |
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| [»] scaffold0702 (2 HSPs) |
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Alignment Details
Target: scaffold0662 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 2623 - 2323
Alignment:
| Q |
18 |
aaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactttggct |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2623 |
aaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactcgtact |
2524 |
T |
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| Q |
118 |
tgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaa |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2523 |
tgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaa |
2424 |
T |
|
| Q |
218 |
tataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaaggtacccttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
2423 |
tataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctctttttttatcaactctgcattaccatcattcttcaaggtacccttt |
2324 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
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|
| T |
2323 |
g |
2323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 35172166 - 35172466
Alignment:
| Q |
18 |
aaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactttggct |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35172166 |
aaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactcgtact |
35172265 |
T |
|
| Q |
118 |
tgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaa |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35172266 |
tgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaa |
35172365 |
T |
|
| Q |
218 |
tataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaaggtacccttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
35172366 |
tataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctctttttttatcaactctgcattaccatcattcttcaaggtacccttt |
35172465 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
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| T |
35172466 |
g |
35172466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 2159 - 2456
Alignment:
| Q |
18 |
aaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactttggct |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2159 |
aaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactcgtact |
2258 |
T |
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| Q |
118 |
tgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaa |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259 |
tgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaa |
2358 |
T |
|
| Q |
218 |
tataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaaggtaccct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
2359 |
tataacccaacattgcattttcttgtaatgctccattggtttcttattctccactttttttatcaactctgcatcaccatcattcttcaaggtaccct |
2456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 5473 - 5726
Alignment:
| Q |
18 |
aaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactttggct |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5473 |
aaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaactcgtact |
5572 |
T |
|
| Q |
118 |
tgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaa |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573 |
tgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatctttttcaa |
5672 |
T |
|
| Q |
218 |
tataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5673 |
tataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctc |
5726 |
T |
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