View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_59 (Length: 330)
Name: NF20479_low_59
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_59 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 41169037 - 41169345
Alignment:
| Q |
22 |
attattatcaaagttgtagcagctgctctcagaaatgttccagaagcgaacggtaaacagttttctattatttttctatccatttatgttgtatatacct |
121 |
Q |
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| T |
41169037 |
attattatcaaagttgtagcagctgctctcagaaatgttccagaagcaaacggtaaacagtttcctattatttttctatccatttgtgttgtatttacct |
41169136 |
T |
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| Q |
122 |
taattatcttaggtgttagaagtagtgaaggacccagaaggtgcggagccactgacatatataaatttatagctattacatataacttttgcaacaaaaa |
221 |
Q |
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| T |
41169137 |
taattatcttaggtgttagaagtagtgaaggacccagaaggtgcggagccactgacatatataaatttatagctattacatataacttttgcaacaagaa |
41169236 |
T |
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| Q |
222 |
tacgtaagtaccgtatacattactgtgaatgttgccgaattgttgactgaagtgtttatcccacaaaaccaaacttgcaaaggctgtttgaagcaaactc |
321 |
Q |
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| T |
41169237 |
tacgtaagtaccgtatacattactgtgaatgttgccgaattgttgactgaagtgtttctcccacaaaaccaaacttgcaaaggctgtttgaagcaaactc |
41169336 |
T |
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| Q |
322 |
aagtagtat |
330 |
Q |
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| T |
41169337 |
aaatagtat |
41169345 |
T |
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