View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_6 (Length: 646)
Name: NF20479_low_6
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 166 - 630
Target Start/End: Original strand, 39361758 - 39362217
Alignment:
| Q |
166 |
cataaatcgttttgcatagtgttctcgttaaataagtttttcttaagtttgtctaaaacaaattcttaggtgtgatgaaacagggtaagggcataannnn |
265 |
Q |
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| T |
39361758 |
cataaatcgttttgcatagtgttcttgtcaaataagtttttcttaagtttgtctaaaacaaattcttaggtgtgatgaaacagggtaagggcataatttt |
39361857 |
T |
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| Q |
266 |
nnncttattaaattgtctaataattaaaaattcacttattaagatgattaagtgaaaatttttagagttcaaagtcaatcccgacatagtgcaatgtttc |
365 |
Q |
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| T |
39361858 |
tttcttattaaattgtctaataattaaaaattcacttgttaag---------tgaaaaattttagagttcaaagccaaccccgatatagtacaatgtttc |
39361948 |
T |
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| Q |
366 |
cggtaattgagttatgaattctgnnnnnnnnnnncttttcatattacacttgcgcgacatgatatcatatgacattagacaatttaagtgtaacacgtta |
465 |
Q |
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| T |
39361949 |
tgataattgagttatgaattctattatt-------ttttcatattacacttgcgcgacatgatatcatatgacattagacaatttaagtgtaacacgtta |
39362041 |
T |
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| Q |
466 |
caataccattattttaaacataaaaatatgtgaaataaggagaaagaaaataattaaattgatttatgtgttaatgttaatgacattctcgtgaagcatt |
565 |
Q |
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| T |
39362042 |
caataccattattttaaacataaaaatatgtgaaataaggagaaagaaaataattaaattgatttatgtgttaatgttaatgacattctcgtgaagcatt |
39362141 |
T |
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| Q |
566 |
------------ttagttaaaaagaaggtttttccctgaaaaataataataattatcattggctataaagtggttaa |
630 |
Q |
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| T |
39362142 |
ttcttctatgtattagttaaaaagaaggtttttccctg-aaaataataattattatcattggctataaagtggttaa |
39362217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 39361609 - 39361709
Alignment:
| Q |
16 |
aatatttacgtaggattgccttcaaacttcaaaatatgaactataaaaccaaattatgcttagcaagaaccccttgttgcatatcttgaaaaatgaatga |
115 |
Q |
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| T |
39361609 |
aatatttacgtaggattgccttcaaacttcaaaatatgaactataaaaccaaattatgcttagcaagaaccccttgttgcatatcttgaaaaatgaatga |
39361708 |
T |
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| Q |
116 |
a |
116 |
Q |
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| T |
39361709 |
a |
39361709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 47376397 - 47376333
Alignment:
| Q |
436 |
gacattagacaatttaagtgtaacacgttacaataccattattttaaacataaaaatatgtgaaa |
500 |
Q |
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| T |
47376397 |
gacattggtcaattcaagtgtcacacatggcaatacaatttttttaaacataaaaatatgtgaaa |
47376333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 500
Target Start/End: Complemental strand, 48380145 - 48380080
Alignment:
| Q |
435 |
tgacattagacaatttaagtgtaacacgttacaataccattattttaaacataaaaatatgtgaaa |
500 |
Q |
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| T |
48380145 |
tgacattggccaattgaagtgtgacacgtggcaatacaatttttttaaacataaaaatatgtgaaa |
48380080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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