View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_62 (Length: 324)
Name: NF20479_low_62
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 50822508 - 50822215
Alignment:
| Q |
14 |
agaggtggatgacttcgtttccatggaaactcttgatgaagagggaatgctaaggtgtgggttgtgtaatattgcttgtatagattatgtgattatgggg |
113 |
Q |
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| T |
50822508 |
agaggtggatgacttcgtttccatggaaactcttgatgaagagggaatgctaaggtgtgggttgtgtaatattgcttgtatagattatgtgattatgggg |
50822409 |
T |
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| Q |
114 |
cttaatactttctgcagcaattcgtgtaagggatgttttgatgatttacaaaagcaactttttgagaatgttaccattgatgatgcatcagcatcatctc |
213 |
Q |
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| T |
50822408 |
cttaatactttctgcagcaattcgtgtaagggatgttttgatgatttacaaaagcaactttttgagaatgttaccattgatgatgcatcagcatcatctc |
50822309 |
T |
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| Q |
214 |
tcatcatcagatatgatacaaaaaagtcaaaaatcaatcaacaatgtgattacgaactgttcaaggaagcagcagaaacgttatgttatggctt |
307 |
Q |
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| T |
50822308 |
tcatcatcagatatgatacaaaaaagtcaaaaatcaatcaacaatgtgattacgaactgttcaaggaggcagcagaaacgttatgttatggctt |
50822215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 50853353 - 50853646
Alignment:
| Q |
14 |
agaggtggatgacttcgtttccatggaaactcttgatgaagagggaatgctaaggtgtgggttgtgtaatattgcttgtatagattatgtgattatgggg |
113 |
Q |
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| T |
50853353 |
agaggtggatgacttcgtttccatggaaactcttgatgaagagggaatgctaaggtgtgggttgtgtaatattgcttgtatagattatgtgattatgggg |
50853452 |
T |
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| Q |
114 |
cttaatactttctgcagcaattcgtgtaagggatgttttgatgatttacaaaagcaactttttgagaatgttaccattgatgatgcatcagcatcatctc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853453 |
cttaatactttctgcagcaattcgtgtaagggatgttttgatgatttacaaaagcaactttttgagaatgttaccattgatgatgcatcagcatcatctc |
50853552 |
T |
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| Q |
214 |
tcatcatcagatatgatacaaaaaagtcaaaaatcaatcaacaatgtgattacgaactgttcaaggaagcagcagaaacgttatgttatggctt |
307 |
Q |
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| T |
50853553 |
tcatcatcagatatgatacaaaaaagtcaaaaatcaatcaacaatgtgattacgaactgttcaaggaggcagcagaaacgttatgttatggctt |
50853646 |
T |
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