View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_low_64 (Length: 308)
Name: NF20479_low_64
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_64 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 370332 - 370448
Alignment:
| Q |
35 |
gaattatgtaaaagctttgagatttgtatagtaatagcaatctaatgatagggttggaagaatcactgaggtgatcttgttttactgacgacattcttcc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
370332 |
gaattatgtaaaagctttgagatttgtatagtaatagcaatctaatga-----------gaatcactgaggtgatcttgttttactgacgacattcttcc |
370420 |
T |
|
| Q |
135 |
ttgaaaatgatttctggaatcagtttaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
370421 |
ttgaaaatgatttctggaatcagtttaa |
370448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 371428 - 371520
Alignment:
| Q |
193 |
aaaagatttctccagagnnnnnnntcaccttttataaattacacaactttacataccacatgaaatgaaagaagaatcgaggaagaggttttc |
285 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
371428 |
aaaagatttctccagagaaaaaaatcaccttttataaattacacaactttacataccacatgaaatgaaagaaaaatcgaggaagaggttttc |
371520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 42962683 - 42962782
Alignment:
| Q |
193 |
aaaagatttctccagagnnnnnnntcaccttttataaattacacaactttacataccacatgaaatgaaagaagaatcgaggaagaggttttcatgtttt |
292 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
42962683 |
aaaagatttctccagagaaaaaaatcaccttttataaattacacaactttacataccacatgaaatgaaagaagaatcgaggaagagattttcacgtttt |
42962782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 47536289 - 47536221
Alignment:
| Q |
217 |
tcaccttttataaattacacaactttacataccacatgaaatgaaagaagaatcgaggaagaggttttc |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47536289 |
tcaccttttataaattacacaactttacataccacatgaaatgaaagaagaatcgaggaagaggttttc |
47536221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 23153109 - 23153178
Alignment:
| Q |
217 |
tcaccttttataaattacacaactttacataccacatgaaatgaaaga-agaatcgaggaagaggttttc |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
23153109 |
tcaccttttataaattacacaactttacataccttgtgaattgaaagacggaatcgaggaagaggttttc |
23153178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 44218464 - 44218400
Alignment:
| Q |
221 |
cttttataaattacacaactttacataccacatgaaatgaaagaagaatcgaggaagaggttttc |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44218464 |
cttttataaattacacaactttacataccacatgaaatgaaagaagaatcgaggaagaggttttc |
44218400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 21569903 - 21569811
Alignment:
| Q |
193 |
aaaagatttctccagagnnnnnnntcaccttttataaattacacaactttacataccacatgaaatgaaagaagaatcgaggaagaggttttc |
285 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
21569903 |
aaaagatttctccagagaaaaaaatcaccttttataaattacacaactttacataccacgtgaattgaaagacgaatcgaggaagaggttttc |
21569811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 27226017 - 27226051
Alignment:
| Q |
217 |
tcaccttttataaattacacaactttacataccac |
251 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27226017 |
tcaccttttatcaattacacaactttacataccac |
27226051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University