View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_low_65 (Length: 298)
Name: NF20479_low_65
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_65 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 41101792 - 41101530
Alignment:
| Q |
13 |
aaaatcaaagaagtttgtaacaacaacacaaataatgaacaaaatggaagaagtgtgtaacagcaatacataatgaacaatggagatcatgctannnnnn |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41101792 |
aaaatcaaagaagtttgtaacaacaacacaaataatgaacaaaatggaagaggtgtgtaagagcaatacataatgaacaatggagatcatgctatttttt |
41101693 |
T |
|
| Q |
113 |
nnaacagcatattatatatatgaaaagagcttccacaaagatagtgggatgagctcaaaattacagaggagaataaagcatcctcacgcccccaacataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41101692 |
ttaacagcatattatatatatgaaaagagcttccacaaagatagtgggatgagctcaaaattacagaggacaataaagcatcctcacgcccccaacataa |
41101593 |
T |
|
| Q |
213 |
caacacctaccaaaactacacaaacacctcctgttacagtaaacgcttaaaaatacaatctca |
275 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41101592 |
caacacctaccaaaactacacaaacccctcctgttacagtaaacgcttaaaaatacaatctca |
41101530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 39578020 - 39577959
Alignment:
| Q |
13 |
aaaatcaaagaagtttgtaacaacaacacaaataatgaacaaaatggaagaagtgtgtaaca |
74 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
39578020 |
aaaatcaaagaagtttgtaacatcaacatagataatgaacaaaatggaagaagtgtgtaaca |
39577959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 33239238 - 33239299
Alignment:
| Q |
13 |
aaaatcaaagaagtttgtaacaacaacacaaataatgaacaaaatggaagaagtgtgtaaca |
74 |
Q |
| |
|
||||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
33239238 |
aaaatgaaagaagtttgtaacatcaacatagataatgaacaaaatggaagaagtgtgtaaca |
33239299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University