View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_67 (Length: 296)
Name: NF20479_low_67
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_67 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 96 - 296
Target Start/End: Complemental strand, 26501275 - 26501075
Alignment:
| Q |
96 |
acaatagtgtatttgacaataatgtaatatagcagacccatgcatactagtagtaggaatgtatagcacgatattgcattttaatatcaaagtagcattt |
195 |
Q |
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| T |
26501275 |
acaatagtgtatttgacaataatgtaatatagcagacccatgcatactagtagtacgaatgtatagcacgatattgaattttaatatcaaagtagcattt |
26501176 |
T |
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| Q |
196 |
gaattacttatccaaatnnnnnnnggtagcaaatattttggttacaagtgggaaagaaggcaaaaaataaactagagaaaacagaaagttaacgcccgac |
295 |
Q |
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| T |
26501175 |
gaattacttatccaaataaaaaaaggtagcaaatattttggttacaagtgggaaagaaggcaaaaaataaactagagaaaacagaaagctaacgcccgac |
26501076 |
T |
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| Q |
296 |
a |
296 |
Q |
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| T |
26501075 |
a |
26501075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26501370 - 26501314
Alignment:
| Q |
1 |
aatagtaaagcatgtttctacggtgtgtgatgctgacagtgacatcatcatggatta |
57 |
Q |
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| T |
26501370 |
aatagtaaagcatgtttctacggtgtgtgatgctgacagtgacatcatcatggatta |
26501314 |
T |
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