View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_7 (Length: 646)
Name: NF20479_low_7
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Original strand, 34319851 - 34320481
Alignment:
| Q |
1 |
acagacaaacgtgtattcaaagaccacttaatacatttgtacatgacacacacacaaacaaaggggtatttaaagatgaacaattttctaacttcattgg |
100 |
Q |
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| T |
34319851 |
acagacaaacgtgtattcaaagaccacttaatacatttgtacatgacacacacacaaacaaaggggtatttaaagatgaacaattttctaacttcattgg |
34319950 |
T |
|
| Q |
101 |
ggcagacccatttgtacataaccctttggtcttgaagcaggctagtctaaacctattttgtcccctttacttttcttctac---ataactagatcatctg |
197 |
Q |
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| T |
34319951 |
ggcagacccatttgtacataaccctttggtcttgaagcaggctagtctaaacctattttgtcccctttacttttcttctactccataactagatcatctg |
34320050 |
T |
|
| Q |
198 |
caatagtgtaaaacgtgcatgttatggtaacagataaagtgtgcaaataattgattaatcaccaccgtcacactcaagtagtcaagtttaatcccactat |
297 |
Q |
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| T |
34320051 |
caatagtgtaaaacgtgcatgttatggtaacagataaagtgtgcaaataattgattaatcaccaccgtcacactcaagtagtcaagtttaatcccactat |
34320150 |
T |
|
| Q |
298 |
acttataactatccattgaaaatcaaagataagattagacattgataacttttttaaattaaatttatctccatatcatgcatattataaaagctaggaa |
397 |
Q |
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| T |
34320151 |
acttataactatccattgaaaatcaaagataagattagacattgataacttttttaaattaaatttatctccatatcatgcatattataaaagctaggaa |
34320250 |
T |
|
| Q |
398 |
ttgtaagaataatcatgtctgagggcatccagccctgatattgcctaggccagaaaatttgaggccacattttgctttttatctgttccttgtgtaagac |
497 |
Q |
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| T |
34320251 |
ttgtaataataatcatgtctgaaggcatccagccctgatattgccaaggccagaaaatttgaggccacattttgctttttatctgttccttgtgtaagac |
34320350 |
T |
|
| Q |
498 |
atgatttccaaagccaaacgattctgtttgctttttagtgtacatttgaatggacccttttagcttcaaataggaaactctgtctctgatgtagatagtt |
597 |
Q |
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| T |
34320351 |
atgatttccaaagccaaacgattctgtttgctttttagtgtacatttgaatggacccttttagcttcaaataggaaactctgtctctgatgtagatagtt |
34320450 |
T |
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| Q |
598 |
ttgattagtctttcaaaatgagtaactcatt |
628 |
Q |
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| T |
34320451 |
ttgattagtctttcaaaatgagtaactcatt |
34320481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 34319695 - 34319666
Alignment:
| Q |
81 |
caattttctaacttcattggggcagaccca |
110 |
Q |
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| T |
34319695 |
caattttctaacttcattggggcagaccca |
34319666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 41730666 - 41730703
Alignment:
| Q |
13 |
gtattcaaagaccacttaatacatttgtacatgacaca |
50 |
Q |
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| T |
41730666 |
gtattcaaagaccacttaatgcatttgtacataacaca |
41730703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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