View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_70 (Length: 290)
Name: NF20479_low_70
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 9802572 - 9802828
Alignment:
| Q |
15 |
cataggaataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtagggttaatacgcccgttggttacacatgtagacgttaagatatc |
114 |
Q |
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| T |
9802572 |
cataggaataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtggggttaatacgcccgctggtttcacatgtagacgttaagatatc |
9802671 |
T |
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| Q |
115 |
atgtatgagcaatggccaatgaatgccattgccaatggacggtttctattacactatattaattaattatgtacctataaattaataacgtccattttat |
214 |
Q |
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| T |
9802672 |
atgtatgagcaatggccaatgaatgccattgccaatggacggttcctattacactatattaattaattatgtacctataaattaacaacgtccattttat |
9802771 |
T |
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| Q |
215 |
aataatactaatctatatatttgtggtgatcttgttcttaattgtgatatcaatgga |
271 |
Q |
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| T |
9802772 |
aataatactaatctatatatttgtggtgatcttgttcttaattgtgatatcaatgga |
9802828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 9796571 - 9796833
Alignment:
| Q |
15 |
cataggaataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtagggttaatacgcccgttggttacacatgtagacgttaagatatc |
114 |
Q |
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| T |
9796571 |
cataggaataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtggggttaatacgcccgctggtttcacatgtagacgttaagatatc |
9796670 |
T |
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| Q |
115 |
atgtatgagcaatggccaatgaatgccattgccaatggacggtttctattacactatattaattaattatgtacctataaattaataacgtccattttat |
214 |
Q |
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| T |
9796671 |
atgtatgagcaatggccaatgaatgccattgccaatggacggttcctattacactatattaattaattatgtacctataaattaataacgtccattttat |
9796770 |
T |
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| Q |
215 |
aataatactaatc------tatatatttgtggtgatcttgttcttaattgtgatatcaatgga |
271 |
Q |
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| T |
9796771 |
aataatactaatctatatatatatatttgtggtgatcttgttcttaattgtgatatcaatgga |
9796833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 9757492 - 9757665
Alignment:
| Q |
90 |
ttacacatgtagacgttaaga---tatcatgtatgagcaatggccaatgaatgccattgccaatggacggtttctattacactatattaattaattatgt |
186 |
Q |
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||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| | || || ||| |||||||||| ||||||||| |
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| T |
9757492 |
ttacatatgtagacgttaagaatataacatgtatgagcaatggccaatgcatgccattgccaatggatgattcctgttatactatattaactaattatgt |
9757591 |
T |
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| Q |
187 |
acctataaattaataacgtccattttataataatactaatctatatatttgtggtgatcttgttcttaattgtgat |
262 |
Q |
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| T |
9757592 |
accaataaattaattacgtcca--ttataatagtactaaactataaaattccagtgatcttgttcttaattgtgat |
9757665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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