View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_71 (Length: 288)
Name: NF20479_low_71
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 28840706 - 28840965
Alignment:
| Q |
18 |
taaatttggttaaggatataatattggagctaaacgtggcataggatgaatggttgctccacatgcaggaaaattatacgctgccatattatatctcaga |
117 |
Q |
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| T |
28840706 |
taaatttggttaaggatataatattggagctaagcttggcataggatgaatggttgctccacatgcaggaaaattatacgctgccatattatatctcaga |
28840805 |
T |
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| Q |
118 |
caatatgtctatctaattt---------------gtacgcaagttaatgcagcattagctattgagggattactatgacttaccatagcatttctactaa |
202 |
Q |
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| T |
28840806 |
caatatgtctatctaatttgtcattaatttgtacgtacgcaagttaatgcagca-tagctatagagggattactatgacttactatagcatttctactaa |
28840904 |
T |
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| Q |
203 |
gtatttatcttataaaagttatgcatgtattatgtacttgaaggagttaaagaaatgtgaa |
263 |
Q |
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| T |
28840905 |
gtatttatcttataaaagttacgcatgtattatgtacttgaaggagttaaagaaatgtgaa |
28840965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 22728848 - 22729067
Alignment:
| Q |
18 |
taaatttggttaaggatataatattggagctaaacgtggcataggatgaatggttgctccacatgcaggaaaattatacgctgccatattatatctcaga |
117 |
Q |
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|||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
22728848 |
taaattaggttaaggatataatattggagctaagcgtggcgtagaatgaatggttgctcctcatgcag-aaaattatacgctgccatattatatctcaga |
22728946 |
T |
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| Q |
118 |
caatatgtctatctaatttgtacgcaagttaatgcagcattagctattgagggattactatgacttaccatagcatttctactaagtatttatcttataa |
217 |
Q |
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| T |
22728947 |
caatatgtctatctaatttgtacgcaagttaatgcagca-tagctatagagggattactatgacttactataacatttctactaagtatttatcttataa |
22729045 |
T |
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| Q |
218 |
aagttatgcatgtattatgtac |
239 |
Q |
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| T |
22729046 |
aagttatgcatgtattatgtac |
22729067 |
T |
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