View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_72 (Length: 286)

Name: NF20479_low_72
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_72
NF20479_low_72
[»] chr1 (3 HSPs)
chr1 (1-275)||(44723642-44723917)
chr1 (88-134)||(49200073-49200119)
chr1 (82-134)||(6539674-6539726)
[»] chr4 (1 HSPs)
chr4 (81-134)||(46321450-46321503)
[»] chr8 (1 HSPs)
chr8 (88-132)||(5729234-5729278)
[»] chr7 (1 HSPs)
chr7 (82-134)||(24532809-24532860)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 44723917 - 44723642
Alignment:
Q  1 ccatttaattccacaggtcaccatatgttggaaaatacagtatgtgaactaatagtggaagtttattaacatgatagtaaaggtagcacttagg-taaca 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||||||||| | |||||    
T  44723917 ccatttaattccacaagtcaccatatgttggaaaatacagtatgtgaactagtagtggaagtttattaacatgatactagagctagcacttaagataaca 44723818  T
Q  100 ttgtggttggtaatattgatgacattgatcaaccataataattacaataatatcaagtatatacatatattatgtcgaagtcctcgaaatcccttaaatt 199  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||    
T  44723817 ttttggttggtaatattgatgacattgatcaaccataataattgcaataatatcaagtatatacatacagtatgttgaagtccttgaaatcccttaaatt 44723718  T
Q  200 tgtacacttataattctcaaacactcattttaatctcattttctctctatatctcttatcatattacaccattctt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44723717 tgtacacttataattctcaaacactcattttaatctcattttctctctatatctcttatcatattacaccattctt 44723642  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 49200119 - 49200073
Alignment:
Q  88 acttaggtaacattgtggttggtaatattgatgacattgatcaacca 134  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  49200119 acttaggtgacattgtggttggtgatattgatgacattgaccaacca 49200073  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 6539726 - 6539674
Alignment:
Q  82 ggtagcacttaggtaacattgtggttggtaatattgatgacattgatcaacca 134  Q
    |||||||||| ||| |||||||||||| | |||||| |||||||| |||||||    
T  6539726 ggtagcacttgggtgacattgtggttgatgatattggtgacattggtcaacca 6539674  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 46321503 - 46321450
Alignment:
Q  81 aggtagcacttaggtaacattgtggttggtaatattgatgacattgatcaacca 134  Q
    |||||||||||  || |||||||||||||| |||||| ||||||||| ||||||    
T  46321503 aggtagcacttgagtgacattgtggttggtgatattggtgacattgaccaacca 46321450  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 5729234 - 5729278
Alignment:
Q  88 acttaggtaacattgtggttggtaatattgatgacattgatcaac 132  Q
    ||||| || ||||||||||| ||||||||| ||||||||||||||    
T  5729234 acttacgtgacattgtggtttgtaatattggtgacattgatcaac 5729278  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 24532860 - 24532809
Alignment:
Q  82 ggtagcacttaggtaacattgtggttggtaatattgatgacattgatcaacca 134  Q
    |||||||||| |||||||||||||||||| | | || ||||||||||||||||    
T  24532860 ggtagcacttgggtaacattgtggttggtgacactg-tgacattgatcaacca 24532809  T

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