View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_77 (Length: 278)
Name: NF20479_low_77
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 7124705 - 7124952
Alignment:
| Q |
18 |
catcatgtgttttttcataaactacatcgataaatttatgaatactagtgcataaaattaaaaattgttttgtataagctcaaatagtagcaaattcaat |
117 |
Q |
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| T |
7124705 |
catcatgtgttttttcataaactacatcgataaatttatgaatactagtgcataaaattaaaaattgttttgtataagctcaaatagtagcaaattcaat |
7124804 |
T |
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| Q |
118 |
ctggcactgtataaaaacaacatatgacacatatataaacaatttaagatagaaaaggagaggacaagactggtcacggaaatgatgaagccaatgttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7124805 |
ctggcactgtataaaaacaacatatgacacatatataaacaatttaagatagaaaaggagaggacaagactggtcacggaaatgatgaagccaatgttct |
7124904 |
T |
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| Q |
218 |
catagatctcccattgcgctcgtggatttacttgatactgtggtgatg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7124905 |
catagatctcccattgcgctcgtggatttacttgatactgtggtgatg |
7124952 |
T |
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