View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_82 (Length: 254)
Name: NF20479_low_82
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_82 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0251 (1 HSPs) |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 37808075 - 37807842
Alignment:
| Q |
16 |
atagagtgatttaataggtttatgtatgatatatcttaaatatcattattattgtgttgatatatacgtacgtacctattacccaatttttcatgaagtt |
115 |
Q |
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| T |
37808075 |
atagagtgatttaataggtttatg----atata-cacaaatatcattattattgtgttgatacatacgtacgtacctattacccaatttttcatgaagtt |
37807981 |
T |
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| Q |
116 |
tgatgatagtctcttcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttc |
215 |
Q |
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| T |
37807980 |
tgatgatagtctcttcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttc |
37807881 |
T |
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| Q |
216 |
aagacctgcaaacaaattaagtactgaattccaagatat |
254 |
Q |
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| T |
37807880 |
aagacctgcaaacaaattaagtactgaattccaagatat |
37807842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 37789346 - 37789204
Alignment:
| Q |
88 |
tacctattacccaatttttcatgaagtttgatgatagtctcttcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccacc |
187 |
Q |
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| T |
37789346 |
tacctattacccagtttttcatgaagtttgatgataagctcttcctcttgttgattgaagttccctcttttgacatctggccttagatagttcatccacc |
37789247 |
T |
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| Q |
188 |
ttagtctacaactcttcccacacctttcaagacctgcaaacaa |
230 |
Q |
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| T |
37789246 |
ttagtctacaactcttaccacacctttcaagccctgaaaacaa |
37789204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 9952 - 9870
Alignment:
| Q |
130 |
tcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct |
212 |
Q |
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| T |
9952 |
tcttcttcttgagtaaagtttcctcttttgatattaggccttagataattcaaccacctcaatctacaactcttcccacacct |
9870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 262026 - 262106
Alignment:
| Q |
143 |
taaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttcaagacctg |
223 |
Q |
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| T |
262026 |
taaagttccctcttctgatattaggccttagataattcagccacctcaatctacaactcttcccacaccttgaaagacctg |
262106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 237133 - 237226
Alignment:
| Q |
130 |
tcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacctttcaagacctg |
223 |
Q |
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| T |
237133 |
tcttcttcttgagtgaagtttcctcttttgatattaggtcttaaataattcagccacctcaatctacaactcttcccacaccttgaaagacctg |
237226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 41544340 - 41544258
Alignment:
| Q |
149 |
tccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct-ttcaagacctgcaaacaaa |
231 |
Q |
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| T |
41544340 |
tccctctcttgatattgggtctaagatagttcaaccatcttagcctgcaactctttccacacctattcaa-acctgcaaacaaa |
41544258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 34357760 - 34357708
Alignment:
| Q |
157 |
ttgatatctggccttagatagttcaaccaccttagtctacaactcttcccaca |
209 |
Q |
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| T |
34357760 |
ttgatattaggccttaaatagttcaaccatcttagacgacaactcttcccaca |
34357708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 4610890 - 4610946
Alignment:
| Q |
156 |
tttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct |
212 |
Q |
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| T |
4610890 |
tttgatgtctggcctcagataattcagccaccttagacggcaactcttcccacacct |
4610946 |
T |
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