View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_low_83 (Length: 254)
Name: NF20479_low_83
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_83 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 17717057 - 17716817
Alignment:
| Q |
1 |
tcaccggatcaatcatgtcattactattatagcgttctttcaaagtttggctatatttgatgaaaaacaagttctgcaacatctcatgttcaagcctatt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17717057 |
tcaccgtatcaatcttgtcattactattattgcgttctttcaaagtttggctatatttgatgaaaaacaagttctgcaacatctcatgttcaagcctatt |
17716958 |
T |
|
| Q |
101 |
tcttttcttggattgaatctattataaattataacttaaatgttagtttaaaacaaaataatagataatacattatgaaactctaattctaaagaacata |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17716957 |
tcttttcttggattgaatctattacaaattataacttaaatgttagtttaaaa-taaatgatagataatacattatgaaactctaattctaaagaacata |
17716859 |
T |
|
| Q |
201 |
atatcaaatatgcacatgctcaaaagcactccaattcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17716858 |
atatcaaatatgcacatgctcaaaagcactccaattcatctc |
17716817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 20010293 - 20010406
Alignment:
| Q |
39 |
ttcaaagtttggctatatttgatgaaaaacaagttctgcaacatctcatgttcaagcctatttcttttcttggattgaatctattataaattataactta |
138 |
Q |
| |
|
|||||||||||| |||| |||| |||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
20010293 |
ttcaaagtttggttatacttgacaaaaaccaatttttgcaacatctcatgttcaagcctatttcttttcttggagtgaatctatta-aaattataattta |
20010391 |
T |
|
| Q |
139 |
aatgttagtttaaaa |
153 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
20010392 |
aatgttaatttaaaa |
20010406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 24193503 - 24193616
Alignment:
| Q |
39 |
ttcaaagtttggctatatttgatgaaaaacaagttctgcaacatctcatgttcaagcctatttcttttcttggattgaatctattataaattataactta |
138 |
Q |
| |
|
|||||||||||| | ||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
24193503 |
ttcaaagtttggttgtatttgacaaaaatcaatttttgcaacatctcatgttcaagcctatttcttttcttggagtgaatctatta-aaattataattta |
24193601 |
T |
|
| Q |
139 |
aatgttagtttaaaa |
153 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
24193602 |
aacgttagtttaaaa |
24193616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 24195565 - 24195452
Alignment:
| Q |
39 |
ttcaaagtttggctatatttgatgaaaaacaagttctgcaacatctcatgttcaagcctatttcttttcttggattgaatctattataaattataactta |
138 |
Q |
| |
|
|||||||||||| | || |||| |||| ||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| |
|
|
| T |
24195565 |
ttcaaagtttggttgtacttgacaaaaatcaatttttgcaacatctcatgttcaagcctatttcttttcttagagtgaatctatta-aaattataattta |
24195467 |
T |
|
| Q |
139 |
aatgttagtttaaaa |
153 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
24195466 |
aatgttattttaaaa |
24195452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 3070589 - 3070703
Alignment:
| Q |
39 |
ttcaaagtttggctatatttgatgaaaaacaagttctgcaacatctcatgttcaagcctatttcttttcttggattgaatctattataaattataactta |
138 |
Q |
| |
|
|||||||||||| | || |||| |||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||| |
|
|
| T |
3070589 |
ttcaaagtttggttgtacttgacaaaaaccaatttttgcaacatctcctgttcaagcctatttcttttcttggagggaatctattacaaattataattta |
3070688 |
T |
|
| Q |
139 |
aatgttagtttaaaa |
153 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3070689 |
aatgttagtttaaaa |
3070703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 9445139 - 9445215
Alignment:
| Q |
77 |
caacatctcatgttcaagcctatttcttttcttggattgaatctattataaattataacttaaatgttagtttaaaa |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
9445139 |
caacatctcatgttcaagcctatttcttttcttggagcgaatctattacaaattataatttaattgttagtttaaaa |
9445215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 2948136 - 2948017
Alignment:
| Q |
34 |
gttctttcaaagtttggctatatttgatgaaaaacaagttctgcaacatctcatgttcaagcctatttcttttcttggattgaatctattataaattata |
133 |
Q |
| |
|
|||| |||||||||||| | || || | |||| ||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| | |
|
|
| T |
2948136 |
gttccttcaaagtttggttgtacttaacaaaaaccaatttttgcaacatctcatgtttaagcctatttcttttcttggagtgaatctattacaaattaga |
2948037 |
T |
|
| Q |
134 |
acttaaatgttagtttaaaa |
153 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
2948036 |
agttaaatgttagtttaaaa |
2948017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University