View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_84 (Length: 254)
Name: NF20479_low_84
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_84 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 34636042 - 34635821
Alignment:
| Q |
18 |
acaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgatgcttggcgtgaaaaggttttttagtagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34636042 |
acaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaagaaggtgggtgatgttgatgcttggcgtgaaaaggttttttagtagt |
34635943 |
T |
|
| Q |
118 |
ggttcctttggaaattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34635942 |
ggttcctttggaaattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgat |
34635843 |
T |
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| Q |
218 |
tcaaccaacaattgtataatag |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34635842 |
tcaaccaacaattgtataatag |
34635821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 536585 - 536365
Alignment:
| Q |
18 |
acaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgatgcttggcgtgaaaaggttttttagtagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
536585 |
acaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaagaaggtgggtgatgttgatgcttggcgtgaaaaggttttttagtagt |
536486 |
T |
|
| Q |
118 |
ggttcctttggaaattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
536485 |
ggttcctttggaaattcttaggcttaggcacggtgg-tttggaaatagctgctagatgagattttaaaatgacaaggctactgcaatagaaggaattgat |
536387 |
T |
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| Q |
218 |
tcaaccaacaattgtataatag |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
536386 |
tcaaccaacaattgtataatag |
536365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 42860923 - 42860719
Alignment:
| Q |
33 |
aaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgatgcttggcgtgaaaaggttttttagtagtggttcctttggaaat |
132 |
Q |
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||||||||||||||| ||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
42860923 |
aaagactatgtacaaggatgaggtggttcaatgaacaagatggtgggtgatgttgatgcttggcgtgaaaaggttttt-agtagtggttcctttgaaaat |
42860825 |
T |
|
| Q |
133 |
tcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgattcaaccaacaattgt |
232 |
Q |
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||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
42860824 |
tcttaggcttaggcatggtg-atttggaaatagctgctaggtgagatttaaaaatgacaaggctactgcaatagaaggaattgattcaaccaataattat |
42860726 |
T |
|
| Q |
233 |
ataatag |
239 |
Q |
| |
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||||||| |
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| T |
42860725 |
ataatag |
42860719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 15874332 - 15874553
Alignment:
| Q |
18 |
acaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgatgcttggcgtgaaaagg-ttttttagtag |
116 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15874332 |
acaagaccaactctgaaagactatgtacaaagatgaggtggttccaagaacaagaaggtgggtgatgttgatgcttggcgtgaaaaggtttttttagtag |
15874431 |
T |
|
| Q |
117 |
tggttcctttggaaattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874432 |
tggttcctttggaaattcttaggcttaggcacggtgg-tttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattga |
15874530 |
T |
|
| Q |
217 |
ttcaaccaacaattgtataatag |
239 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
15874531 |
ttcaaccaacaattgtataatag |
15874553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 6835723 - 6835516
Alignment:
| Q |
30 |
ctgaaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgatgcttggcgtgaaaaggttttttagtagtggttcctttgga |
129 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6835723 |
ctgaaagactatgtacaaagatgaggtggttccatgaacaagaaggtgggtgatgttgatgcttggcgtgaaaaggttttt-agtagtggttcctttgga |
6835625 |
T |
|
| Q |
130 |
aattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgattcaaccaacaat |
229 |
Q |
| |
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||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6835624 |
aattctttggcttaggcatggtg-atttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgattcaaccaacaat |
6835526 |
T |
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| Q |
230 |
tgtataatag |
239 |
Q |
| |
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|||||||||| |
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|
| T |
6835525 |
tgtataatag |
6835516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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