View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_89 (Length: 249)
Name: NF20479_low_89
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_89 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 44724153 - 44723922
Alignment:
| Q |
18 |
attcataattagtttatatcctgagatgatgttcaaatgacttttagctggcatgggaattaatttctacaaaatgataatcacacctacaagtcttact |
117 |
Q |
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| T |
44724153 |
attcataattaatttatatcctgagatgatgttcaaatgacttttagctggcatgggaattaatttctacaaaatgataatcacacctacaagtcttact |
44724054 |
T |
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| Q |
118 |
tgagtttgacacctccatgtttggttttgtagagtctcattgaaaatgagtttacatgtaagatcactttaatctttcaaattaattttgtaagaaatga |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44724053 |
tgagtttgacacctccatgtttagttttgtagagtctcattgaaaatgagtttacatgtaagatcactttaatctttcaaattaatttcgtaagaaatga |
44723954 |
T |
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| Q |
218 |
gttagatttgacataaatttaaaatagcatcc |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44723953 |
gttagatttgacataaatttaaaatagcatcc |
44723922 |
T |
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