View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_9 (Length: 604)

Name: NF20479_low_9
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_9
NF20479_low_9
[»] chr2 (5 HSPs)
chr2 (118-367)||(15874551-15874801)
chr2 (19-200)||(15874368-15874549)
chr2 (82-365)||(31066099-31066384)
chr2 (369-480)||(15874951-15875063)
chr2 (82-364)||(19554000-19554283)
[»] scaffold0485 (1 HSPs)
scaffold0485 (82-346)||(5388-5650)
[»] chr4 (3 HSPs)
chr4 (140-367)||(11247206-11247432)
chr4 (83-312)||(25982694-25982921)
chr4 (259-346)||(18210015-18210102)
[»] chr5 (2 HSPs)
chr5 (81-361)||(21142910-21143188)
chr5 (84-303)||(24876844-24877061)
[»] chr3 (2 HSPs)
chr3 (82-193)||(5824356-5824467)
chr3 (294-367)||(19613524-19613597)
[»] chr7 (1 HSPs)
chr7 (104-328)||(21927415-21927641)
[»] scaffold0103 (1 HSPs)
scaffold0103 (243-355)||(31083-31195)
[»] scaffold0323 (1 HSPs)
scaffold0323 (259-328)||(17922-17991)
[»] scaffold0009 (2 HSPs)
scaffold0009 (82-221)||(204185-204325)
scaffold0009 (295-346)||(204387-204438)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 118 - 367
Target Start/End: Original strand, 15874551 - 15874801
Alignment:
Q  118 atgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttacttcacttacttctattgagcttagtcattattctta 217  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||||||||||||||||    
T  15874551 atgatttcataaccctaatttgtgacaactactagtcttatatactctcaccgattgaacttagttcacttactcctattgaacttagtcattattctta 15874650  T
Q  218 ctaataaagtaacactactcattccaatttaattaattct-cctttttagtatttacctatattctattaattctccaaagttactactaacctcatgaa 316  Q
    |||||||||||||||||||||||||||||||||||||||| ||  ||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  15874651 ctaataaagtaacactactcattccaatttaattaattctccccctttggtatttacctctattctattaattctccaaagttactactaacctcataaa 15874750  T
Q  317 ataatcttccacctctaaattactaaaatgtccttcacttcaaaattacca 367  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  15874751 ataatcttccacctctaaattacgaaaatgtccttcactccaaaattacca 15874801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 15874368 - 15874549
Alignment:
Q  19 aattaaaaagctcaaatcaatgatacgtcttcgttctccaacatcaatgtattcttcaaactcattctctctctagcctttattttgtaaacttaccata 118  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |    
T  15874368 aattaaaaagctcaactcaacaatacgtcttcgttctctaacatcaatgtattcttcaaactcattctctctctagtctctattttgtaaacttaccaaa 15874467  T
Q  119 tgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttacttcacttacttctattgag 200  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||||| ||||||||| |||||||||| ||||||||    
T  15874468 tgatttcataaccctaatttgtgacaactactaatcttatatactctcaccgattgagcttagttcacttactcctattgag 15874549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 82 - 365
Target Start/End: Original strand, 31066099 - 31066384
Alignment:
Q  82 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttac 181  Q
    |||||||| ||||||| ||||||||||| |||||| ||||||||| | | ||| |||| |||||||| ||||||||||||||| ||||  |||||||||     
T  31066099 attctctcgctagcctctattttgtaaatttaccaaatgatttcacagctctagtttgcgactactactagtcttatatactcacaccaattgagcttag 31066198  T
Q  182 ttcacttacttctattgagcttagtcattattcttactaat-aaagtaacactactcattccaatttaatt-aattctcctttttagtatttacctatat 279  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||  | |  | || || |||  |||| | ||||||||||||     
T  31066199 ttcacttactcctattgggcttagtcattattcttactaataaaaataacactactcattttactacacttaaaatcttattttcactatttacctatac 31066298  T
Q  280 tctattaattctccaaagttactactaacctcatgaaataatcttccacctctaaattactaaaatgtccttcacttcaaaattac 365  Q
    |||||||||||||||||||||||||||  ||||| ||| | ||||  ||   |||| |||||||||| |||||| | |||||||||    
T  31066299 tctattaattctccaaagttactactatgctcattaaacattcttttacgcataaactactaaaatggccttcattccaaaattac 31066384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 369 - 480
Target Start/End: Original strand, 15874951 - 15875063
Alignment:
Q  369 cgtgtgactcataatccactttgctaaataagcgtcatctgc-acgtcatcaattgtcacgtcgctctccatgtcagcaaaacgtttaaaacttataggg 467  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  15874951 cgtgtgactcataattcactttgctaaataagtgtcatctgccacgtcatcaattgtcacgtcgctctccatgtcagcaaaacgtttaaaatttatgggg 15875050  T
Q  468 tttgttttgtaac 480  Q
    |||||||||||||    
T  15875051 tttgttttgtaac 15875063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 82 - 364
Target Start/End: Complemental strand, 19554283 - 19554000
Alignment:
Q  82 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttac 181  Q
    |||||||||||||||| |||| ||||||||||  | || |||||| |||||||||||||||||||||  | ||||| ||||||||||   ||| ||||      
T  19554283 attctctctctagcctctattgtgtaaacttaaaa-ataatttcacaaccctaatttgtgactactaacactcttaaatactctcacaaattgcgcttgg 19554185  T
Q  182 ttcacttacttc-tattgagcttagtcattattcttactaataaag-taacactactcattccaatttaattaattctcctttttagtatttacctatat 279  Q
    ||||||||  || ||| | ||||||||||||||||||||||||||  ||||| |||| |||  | |  | |||| |||  |||||| | || | || |||    
T  19554184 ttcacttatctcatatggtgcttagtcattattcttactaataaaaataacattactaattttactacacttaaatcttatttttacttttcatctctat 19554085  T
Q  280 tctattaattctccaaagttactactaacctcatgaaataatcttccacctctaaattactaaaatgtccttcacttcaaaatta 364  Q
     |||||||||||||||||||||||||||||| || ||||| |||||||    ||||||||||||||  |||| ||||| ||||||    
T  19554084 cctattaattctccaaagttactactaaccttattaaatattcttccatgcataaattactaaaataccctttacttctaaatta 19554000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 82 - 346
Target Start/End: Original strand, 5388 - 5650
Alignment:
Q  82 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttac 181  Q
    |||||||||||||| | || ||||||||||||| | ||||||||| ||||||||||||||||||||| | ||||||||||||||||||  |||  ||||     
T  5388 attctctctctagcttctaatttgtaaacttacaa-atgatttcacaaccctaatttgtgactactacttgtcttatatactctcaccaattgttcttag 5486  T
Q  182 ttcacttacttctattgagcttagtcattattcttactaataaagtaacactactcattccaatttaattaat-tctcctttttagtatttacctatatt 280  Q
    ||||||||||  |||||  ||||||| ||||||||||||| ||| |||||||| |||||| |||| | ||||| ||  |||||||  |||||||| ||||    
T  5487 ttcacttactcttattggacttagtc-ttattcttactaacaaa-taacactaatcattctaattcatttaatatcctctttttaccatttacctctatt 5584  T
Q  281 ctattaattctccaaagttactactaacctcatgaaataatcttccacctctaaattactaaaatg 346  Q
    ||| ||||||  | |||||||||| |||||||  ||||| |  ||||||||||||| |||||||||    
T  5585 ctagtaattccaccaagttactacaaacctcaataaatatttctccacctctaaatcactaaaatg 5650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 140 - 367
Target Start/End: Original strand, 11247206 - 11247432
Alignment:
Q  140 tgactactattagtcttatatactctcaccggttgagcttacttcacttacttctattgagcttagtcattattcttactaataaagtaacactactcat 239  Q
    ||||||||| || ||||||||||||||| |  ||| ||||| ||||||||||  |||||||||||||| ||||||||||||| ||| ||||||||||  |    
T  11247206 tgactactaataatcttatatactctcatcaattgggcttagttcacttactcatattgagcttagtc-ttattcttactaacaaa-taacactactagt 11247303  T
Q  240 tccaatttaattaattctcc-tttttagtatttacctatattctattaattctccaaagttactactaacctcatgaaataatcttccacctctaaatta 338  Q
    || |||| |  ||||||| | ||||||  |||||||||||||||| |||||||| |||||||||||| || |||| ||| |||||| |||||||||||||    
T  11247304 tctaattcacgtaattctacatttttaccatttacctatattctagtaattctctaaagttactactcacttcattaaaaaatctt-cacctctaaatta 11247402  T
Q  339 ctaaaatgtccttcact-tcaaaattacca 367  Q
    |||||||  ||||||||  |||||||||||    
T  11247403 ctaaaattcccttcactcccaaaattacca 11247432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 83 - 312
Target Start/End: Complemental strand, 25982921 - 25982694
Alignment:
Q  83 ttctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttact 182  Q
    ||||||||||||||   | |||||||||||| || ||||||||| ||||||| |||||||||  || ||||||||||||||| ||||  ||| ||||| |    
T  25982921 ttctctctctagccaccaatttgtaaacttaacaaatgatttcacaaccctagtttgtgactcttactagtcttatatactcacaccaattgggcttagt 25982822  T
Q  183 tcacttacttctattgagcttagtcattattcttactaataaagtaacactactcattccaatttaattaattctcct-ttttagtatttacctatattc 281  Q
    ||||||||| |||||| | |||||| ||||||||||||| |||  | |||||||||||| |||| | |||| | |||| |||||  |||||||| ||||     
T  25982821 tcacttactcctattgggattagtc-ttattcttactaacaaa-cagcactactcattctaattcacttaa-tatcctcttttacaatttacctctattt 25982725  T
Q  282 tattaattctccaaagttactactaacctca 312  Q
    || ||| ||   |||||||||||||||||||    
T  25982724 tactaactccataaagttactactaacctca 25982694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 259 - 346
Target Start/End: Original strand, 18210015 - 18210102
Alignment:
Q  259 ctttttagtatttacctatattctattaattctccaaagttactactaacctcatgaaataatcttccacctctaaattactaaaatg 346  Q
    ||||||| ||||||| | ||||||||| |||   ||||||| ||||||||||||| ||||||||||||||   ||||| |||||||||    
T  18210015 ctttttactatttacttctattctattcatttctcaaagttgctactaacctcattaaataatcttccactcataaatgactaaaatg 18210102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 81 - 361
Target Start/End: Complemental strand, 21143188 - 21142910
Alignment:
Q  81 cattctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagctta 180  Q
    ||||||||||||| | | || | |||||||||  || ||||||||| ||||||| ||||||||||||| ||||||||||||||| || |  ||| |||||    
T  21143188 cattctctctctaccatctactgtgtaaacttcacaaatgatttcacaaccctagtttgtgactactactagtcttatatactcccatcaattgggctta 21143089  T
Q  181 cttcacttacttctattgagcttagtcattattcttactaataaagtaacactactcattccaatttaattaattctcct-ttttagtatttacctatat 279  Q
     |||||||||  |||||  |||||||| ||||| ||||||| ||| ||||||| ||||||| |||| | |||| | |||| |||||  |||||| | |||    
T  21143088 gttcacttacgcctatttggcttagtc-ttattgttactaacaaa-taacactgctcattctaattcacttaa-tatcctcttttaccatttacatctat 21142992  T
Q  280 tctattaattctccaaagttactactaacctcatgaaataatcttccacctctaaattactaaaatgtccttcacttcaaaa 361  Q
    |||||||| ||| ||||||||||||||||||||   |||| |  ||| | ||||||||||||||||| ||| |||| |||||    
T  21142991 tctattaactctacaaagttactactaacctcaattaatatttctcctcttctaaattactaaaatgccctacactccaaaa 21142910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 84 - 303
Target Start/End: Complemental strand, 24877061 - 24876844
Alignment:
Q  84 tctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttactt 183  Q
    ||||||||||||||  | |||||||||||  || ||||||||| ||||||| |||| |||||||| |||||||||||||||| |||  ||||||||| ||    
T  24877061 tctctctctagcctccaatttgtaaacttgacaaatgatttcacaaccctagtttgggactactactagtcttatatactcttaccaattgagcttagtt 24876962  T
Q  184 cacttacttctattgagcttagtcattattcttactaataaagtaacactactcattccaatttaattaat-tctcctttttagtatttacctatattct 282  Q
    |||||||| ||||||||||||||| |||||||| |||| ||| ||| ||||| ||||| |||| | ||||| ||  | |||||  |||||||| ||||||    
T  24876961 cacttactcctattgagcttagtc-ttattcttgctaacaaa-taatactacacattctaattcacttaatatcatc-ttttaccatttacctttattct 24876865  T
Q  283 attaattctccaaagttacta 303  Q
    ||||| ||  |||||||||||    
T  24876864 attaactccacaaagttacta 24876844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 5824356 - 5824467
Alignment:
Q  82 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttac 181  Q
    |||||||||||||||| |||||||||||| ||||| || |||||| ||||||| ||||||||||||| ||| |||||||||| |||||  ||| |||||     
T  5824356 attctctctctagcctctattttgtaaacctaccaaataatttcacaaccctactttgtgactactactaggcttatatactttcaccaattgggcttag 5824455  T
Q  182 ttcacttacttc 193  Q
    |||| |||||||    
T  5824456 ttcatttacttc 5824467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 19613597 - 19613524
Alignment:
Q  294 aaagttactactaacctcatgaaataatcttccacctctaaattactaaaatgtccttcacttcaaaattacca 367  Q
    |||||||||||||||||||| ||||| || ||||| | ||||||||||| ||| ||||||| ||||||||||||    
T  19613597 aaagttactactaacctcattaaatattcctccacttttaaattactaacatgcccttcacctcaaaattacca 19613524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 104 - 328
Target Start/End: Original strand, 21927415 - 21927641
Alignment:
Q  104 tgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttacttcactta-cttctattgagct 202  Q
    ||||||||||||| || |||||  ||||||||||| |||  ||||| | |||||||||  | || |  ||| | ||  |||||||| || ||||||  ||    
T  21927415 tgtaaacttaccaaattatttctcaaccctaatttttgaagactatcactcttatatatccacaacaattggggttggttcacttaactcctattggact 21927514  T
Q  203 tagtcattattcttactaataaag-taacactactcattccaatttaattaattctcctttttagtatttacctatattctattaattctccaaagttac 301  Q
    ||||||| ||||||||| |||||  ||||||||||||||  | || | ||||  |  ||| ||| ||||||| | |||||||||||||||  ||||||||    
T  21927515 tagtcatcattcttactcataaaaataacactactcattttacttcacttaaaccatcttattactatttacttttattctattaattcttaaaagttac 21927614  T
Q  302 tactaacctcatgaaataatcttccac 328  Q
    |||||||||||| ||||| || |||||    
T  21927615 tactaacctcattaaatattcctccac 21927641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 355
Target Start/End: Original strand, 31083 - 31195
Alignment:
Q  243 aatttaattaattctc-ctttttagtatttacctatattctattaattctccaaagttactactaacctcatgaaataatcttccacctctaaattacta 341  Q
    |||| ||||||||||| |||||||  ||||||||  | |||| ||||||| |||||||| |||| | ||||| |||||| ||| |||||||||||||||     
T  31083 aattcaattaattctctctttttaccatttacctcaactctagtaattctacaaagttattactcatctcataaaataa-ctttcacctctaaattactt 31181  T
Q  342 aaatgtccttcact 355  Q
    ||||| ||||||||    
T  31182 aaatgcccttcact 31195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 17991 - 17922
Alignment:
Q  259 ctttttagtatttacctatattctattaattctccaaagttactactaacctcatgaaataatcttccac 328  Q
    ||||||| ||||||| | |||||||||||||   ||||||| ||||||||||||| |||||||| |||||    
T  17991 ctttttactatttacttctattctattaatttctcaaagttgctactaacctcattaaataatcctccac 17922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 204185 - 204325
Alignment:
Q  82 attctctctctagcctttattttgtaaacttaccatatgatttcataaccctaatttgtgactactattagtcttatatactctcaccggttgagcttac 181  Q
    ||||||||||||||||  | |||||||||||  || ||||||  | || ||  | || ||||||||| ||||||||||||||  ||||  |||||||||     
T  204185 attctctctctagcctccaatttgtaaacttgacaaatgattctacaaaccagagttatgactactactagtcttatatactgccaccaattgagcttag 204284  T
Q  182 ttcacttacttctattgagcttagtcat-tattcttactaa 221  Q
    |||||||| || |||||  ||||||| | ||||||||||||    
T  204285 ttcacttatttttattggacttagtcttatattcttactaa 204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 204387 - 204438
Alignment:
Q  295 aagttactactaacctcatgaaataatcttccacctctaaattactaaaatg 346  Q
    ||||||||||||||||||  ||||| |  |||||||||||||||||||||||    
T  204387 aagttactactaacctcaataaatatttctccacctctaaattactaaaatg 204438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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