View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_97 (Length: 240)
Name: NF20479_low_97
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34377469 - 34377699
Alignment:
| Q |
1 |
aagtcactactctttcccacaaccacttgtgtttccgggacggagggcgatggatgagtgttaccaatggaattgtttgtcaatggcgtggccataattt |
100 |
Q |
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| T |
34377469 |
aagtcattactctttcccacaaccacttgtgtttccgggacggaggccgatgaatgagtgctaccaatggaattgtttgtcaatggtgtggccataattt |
34377568 |
T |
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| Q |
101 |
gttcctaagataggtctattttgatcattaaccaacttagcggaatcccttggtgttctaacaatctcatctgtgacattttgtaaggcagaatggaacg |
200 |
Q |
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| T |
34377569 |
gttcc-aagataggtctattttgatcattaaccaactcagcggaatcccttggtgttctaacaatctcatccgtgacattttgtaaggcagaatggaacg |
34377667 |
T |
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| Q |
201 |
aatttccttgtgccaagtgctgctgtctgtgc |
232 |
Q |
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| T |
34377668 |
aatttccttgtgccaagtgctgctgtctgtgc |
34377699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 35976136 - 35975909
Alignment:
| Q |
4 |
tcactactctttcccacaaccacttgtgtttccgggacggagggcgatggatgagtgttaccaatggaattgtttgtcaatggcgtggccataatttgtt |
103 |
Q |
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| T |
35976136 |
tcactactctttcccacaaccacttgtgtttccgggacggagggcgatggatgggtgctaccaatggaattgtttgtcaatggcgtggccataatttgtt |
35976037 |
T |
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| Q |
104 |
cctaagataggtctattttgatcattaaccaacttagcggaatcccttggtgttctaacaatctcatctgtgacattttgtaaggcagaatggaacgaat |
203 |
Q |
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| T |
35976036 |
cc-aagataggtctattttgatcattaaccaacttagcggaatctcttggtgttctaacaatctcatctatgacattttgtaaggcagaatgatacgaat |
35975938 |
T |
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| Q |
204 |
ttccttgtgccaagtgctgctgtctgtgc |
232 |
Q |
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| T |
35975937 |
ttccttgtgccaagtgcttctgtctgtgc |
35975909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12879505 - 12879734
Alignment:
| Q |
1 |
aagtcactactctttcccacaaccacttgtgtttccgggacggagggcgatggatgagtgttaccaatggaattgtttgtcaatggcgtggccataattt |
100 |
Q |
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||||||||||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12879505 |
aagtcactactctttcccataaccacttgtgttttcgggacaacgggcgatgaatgagtgttaccaatggaattgtttgtcaatgtcgtggccataattt |
12879604 |
T |
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| Q |
101 |
gttcctaagataggtctattttgatcattaaccaacttagcggaatcccttggtgttctaacaatctcatctgtgacattttgtaaggcagaatggaacg |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||| |||||||||||||||| |||| |||||| |
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| T |
12879605 |
gttcc-aagataggtctattttgatcattaaccaactcaacggaattccatggtgttctaacaatctcatccgtgacattttgtaaggtagaaaggaacg |
12879703 |
T |
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| Q |
201 |
aatttccttgtgccaagtgctgctgtctgtg |
231 |
Q |
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||||||||||| ||||||| ||||||||||| |
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| T |
12879704 |
aatttccttgttccaagtgttgctgtctgtg |
12879734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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