View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2047_high_12 (Length: 277)

Name: NF2047_high_12
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2047_high_12
NF2047_high_12
[»] chr4 (15 HSPs)
chr4 (16-275)||(56397582-56397838)
chr4 (16-275)||(42315038-42315302)
chr4 (220-275)||(44930254-44930309)
chr4 (25-146)||(28100397-28100518)
chr4 (223-275)||(3435628-3435680)
chr4 (220-275)||(7820424-7820479)
chr4 (220-275)||(8583663-8583718)
chr4 (31-146)||(37370702-37370817)
chr4 (220-275)||(42218099-42218154)
chr4 (25-138)||(53594234-53594347)
chr4 (23-187)||(38230918-38231082)
chr4 (30-146)||(41762131-41762247)
chr4 (24-141)||(33449999-33450116)
chr4 (58-146)||(53272090-53272178)
chr4 (57-141)||(47685324-47685408)
[»] chr3 (20 HSPs)
chr3 (16-275)||(23697146-23697406)
chr3 (16-199)||(85890-86073)
chr3 (16-275)||(23715602-23715862)
chr3 (16-275)||(23734058-23734318)
chr3 (16-275)||(23753721-23753982)
chr3 (220-275)||(24150488-24150543)
chr3 (220-275)||(30589215-30589270)
chr3 (220-273)||(36054660-36054713)
chr3 (223-275)||(26293224-26293276)
chr3 (220-275)||(19551818-19551872)
chr3 (220-275)||(26005514-26005569)
chr3 (220-275)||(50900089-50900144)
chr3 (222-275)||(38629456-38629509)
chr3 (25-72)||(46749398-46749445)
chr3 (58-151)||(44041854-44041948)
chr3 (25-138)||(45926768-45926881)
chr3 (25-72)||(10104782-10104829)
chr3 (23-146)||(44701688-44701811)
chr3 (25-71)||(10215931-10215977)
chr3 (25-71)||(10225560-10225606)
[»] chr8 (23 HSPs)
chr8 (16-198)||(43489045-43489227)
chr8 (25-196)||(42366190-42366361)
chr8 (220-275)||(40264936-40264991)
chr8 (220-275)||(29259930-29259985)
chr8 (220-275)||(41965456-41965511)
chr8 (220-275)||(43605023-43605078)
chr8 (220-275)||(9457886-9457941)
chr8 (220-275)||(41965235-41965290)
chr8 (24-141)||(8502779-8502896)
chr8 (35-173)||(10127684-10127824)
chr8 (220-272)||(41386525-41386577)
chr8 (220-275)||(2113170-2113225)
chr8 (220-275)||(7148414-7148469)
chr8 (222-273)||(42275351-42275402)
chr8 (220-275)||(43489259-43489314)
chr8 (234-275)||(10796026-10796067)
chr8 (23-152)||(17790581-17790712)
chr8 (222-259)||(4655421-4655458)
chr8 (41-146)||(24318080-24318185)
chr8 (95-146)||(39038938-39038989)
chr8 (33-141)||(2112947-2113055)
chr8 (33-141)||(4302628-4302736)
chr8 (58-146)||(14061727-14061815)
[»] chr7 (14 HSPs)
chr7 (25-275)||(33474669-33474917)
chr7 (16-199)||(12253154-12253336)
chr7 (26-146)||(3634353-3634473)
chr7 (220-275)||(152231-152286)
chr7 (220-275)||(43057330-43057385)
chr7 (220-275)||(47913985-47914040)
chr7 (220-273)||(30111181-30111234)
chr7 (33-146)||(42678008-42678121)
chr7 (220-275)||(12253072-12253127)
chr7 (25-168)||(37042357-37042499)
chr7 (220-273)||(27418298-27418351)
chr7 (23-186)||(46037115-46037288)
chr7 (236-275)||(47912629-47912668)
chr7 (94-146)||(32630915-32630967)
[»] chr2 (19 HSPs)
chr2 (16-199)||(35172400-35172583)
chr2 (16-199)||(7487892-7488075)
chr2 (16-199)||(21736367-21736550)
chr2 (25-196)||(36598233-36598404)
chr2 (25-196)||(14920391-14920559)
chr2 (25-162)||(16146971-16147108)
chr2 (25-162)||(16155557-16155694)
chr2 (220-275)||(6289162-6289217)
chr2 (220-275)||(29941325-29941380)
chr2 (220-275)||(7487810-7487865)
chr2 (220-271)||(21736289-21736340)
chr2 (23-146)||(15284341-15284466)
chr2 (25-71)||(37981769-37981815)
chr2 (24-141)||(34028752-34028869)
chr2 (33-141)||(24193306-24193414)
chr2 (220-259)||(35172338-35172377)
chr2 (23-53)||(2288604-2288634)
chr2 (24-141)||(11534982-11535099)
chr2 (33-146)||(18176284-18176397)
[»] chr5 (13 HSPs)
chr5 (16-199)||(3604216-3604398)
chr5 (31-187)||(378387-378543)
chr5 (25-146)||(28594256-28594377)
chr5 (220-275)||(3604124-3604179)
chr5 (220-275)||(13950451-13950506)
chr5 (220-275)||(40410969-40411024)
chr5 (36-146)||(27786362-27786472)
chr5 (23-146)||(2276020-2276143)
chr5 (25-72)||(26795401-26795448)
chr5 (25-72)||(26806465-26806512)
chr5 (25-71)||(9689235-9689281)
chr5 (24-141)||(6828612-6828729)
chr5 (35-151)||(40460388-40460504)
[»] chr1 (15 HSPs)
chr1 (25-199)||(39758120-39758293)
chr1 (25-199)||(39763474-39763647)
chr1 (223-275)||(26882478-26882530)
chr1 (24-196)||(43553682-43553853)
chr1 (220-275)||(45318841-45318896)
chr1 (220-275)||(52705765-52705820)
chr1 (23-188)||(19007343-19007518)
chr1 (23-187)||(48194736-48194900)
chr1 (220-275)||(45535131-45535186)
chr1 (24-141)||(1928224-1928341)
chr1 (24-141)||(36402394-36402511)
chr1 (220-275)||(39758313-39758370)
chr1 (220-275)||(39763667-39763724)
chr1 (25-146)||(27198419-27198540)
chr1 (58-146)||(4289114-4289202)
[»] scaffold0287 (1 HSPs)
scaffold0287 (26-146)||(11612-11732)
[»] scaffold0472 (1 HSPs)
scaffold0472 (33-146)||(1700-1813)
[»] scaffold0237 (1 HSPs)
scaffold0237 (220-275)||(21099-21154)
[»] chr6 (7 HSPs)
chr6 (220-275)||(29865404-29865459)
chr6 (220-273)||(6476368-6476421)
chr6 (23-187)||(7100310-7100474)
chr6 (23-187)||(8794156-8794320)
chr6 (23-146)||(5957275-5957398)
chr6 (23-188)||(709060-709235)
chr6 (33-141)||(30878008-30878116)
[»] scaffold0153 (1 HSPs)
scaffold0153 (222-275)||(34469-34522)
[»] scaffold0016 (2 HSPs)
scaffold0016 (222-275)||(81437-81490)
scaffold0016 (33-141)||(81602-81710)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 56397582 - 56397838
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  56397582 aagacatcaaaatccgttggtattcaattaagatttctaagaacttataacatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 56397681  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttccnnnnnnnttttannnn 215  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||        
T  56397682 taatggattgtgtgagactttttagttaaaatacactcatccaacaatctcacacaaactcttgagattttgtaatactcttcc---aaatttttatttt 56397778  T
Q  216 nnnnacgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
        |||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  56397779 ttttacgtttcttccaaattcttttctgttctactgcaacaatggcaggttatatatttt 56397838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 42315038 - 42315302
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42315038 aagacatcaaaatccgttggtattcaattaagatttctaaaaacttataaaatgtctcgtggtattgaaaattagacggatttcaatggattcatttgtg 42315137  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttccnnnnnnntt-----tt 210  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||     ||    
T  42315138 taatggattgtgtgagactttttagttaaaatacactcatccaacaatctcacacaaactcttgagattttgtaatactcttccaatttttttatttttt 42315237  T
Q  211 annnnnnnnacgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |        ||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||    
T  42315238 attttttttacgtttctttcaaattcttttctattctactgtaacaatgacaggttatatatttt 42315302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 44930254 - 44930309
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44930254 acgtttcttccaaattcttttctgttctactataacaatggcaggttatatatttt 44930309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 28100518 - 28100397
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    |||||||||| |||||||||||||||||| | ||||||||||||||||  | ||||| |||| |  |  |||||| |||||||| ||| || ||||||||    
T  28100518 aaatccgttgatattcaattaagatttctcacaacttataaaatgtcttttagtattcaaaaattaatagattttgatggattcttttatggaatggatt 28100419  T
Q  125 gtgcgagactttttagttaaaa 146  Q
     || ||||||||||||||||||    
T  28100418 ttgagagactttttagttaaaa 28100397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 3435680 - 3435628
Alignment:
Q  223 tttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  3435680 tttcttccaaattctcttctgttctactgtaacaatggcaggttatatatttt 3435628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 7820424 - 7820479
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  7820424 acgtttcttccaaattcttttatgttctactataacaatgacaggttatatatttt 7820479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 8583718 - 8583663
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  8583718 acgtttcatccaaattcttttctgttctactataacaatggcaggtcatatatttt 8583663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 37370817 - 37370702
Alignment:
Q  31 gttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcga 130  Q
    |||| |||||||||||||||||| | |||||||||||||||    |||||| |||| | ||  ||||||||||||||| ||| || |||||||| || ||    
T  37370817 gttgctattcaattaagatttctcacaacttataaaatgtccttcggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtga 37370718  T
Q  131 gactttttagttaaaa 146  Q
    |||||| |||||||||    
T  37370717 gactttatagttaaaa 37370702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 42218154 - 42218099
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  42218154 acgtttcttccaaattcttttctattctactgtaacaatggcagattatatatttt 42218099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 53594234 - 53594347
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||   |||||| |||| | ||  |||||| |||||||  ||| || ||||||||    
T  53594234 aaatccgttggtattcaattaggatttctcacaacttataaaatgtctttcggtattaaaaaattgatagattttgatggatttttttatggaatggatt 53594333  T
Q  125 gtgcgagacttttt 138  Q
     || ||||||||||    
T  53594334 ttgtgagacttttt 53594347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 38230918 - 38231082
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    |||||||||||||||||||||| |||||||| |  |||||| || ||||   ||||||| |||| |  |  |||||| |||||||| |   || ||||||    
T  38230918 caaaatccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaatgga 38231017  T
Q  123 ttgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttg 187  Q
    || || ||||||||||||||||||    ||| ||| ||||||||||| |||| ||||||||||||    
T  38231018 ttttgtgagactttttagttaaaaatatctcttccaacaatctcacagaaacccttgagattttg 38231082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 41762131 - 41762247
Alignment:
Q  30 cgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcg 129  Q
    |||||||||||||||| ||||||| | ||||||||||||||||  ||||||| ||||||  | |||| || ||| |||| ||| || | |||||| || |    
T  41762131 cgttggtattcaattaggatttctcacaacttataaaatgtcttttggtatttaaaattttatggatattgatgaattcttttatggagtggattttgtg 41762230  T
Q  130 agactttttagttaaaa 146  Q
    | | |||||||||||||    
T  41762231 aaattttttagttaaaa 41762247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 33450116 - 33449999
Alignment:
Q  24 aaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 123  Q
    ||||| || |||||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  |||||||||||||||||  | || |||||||||    
T  33450116 aaaattcggtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattctacggattttaatggattattgtgagtaatggat 33450017  T
Q  124 tgtgcgagactttttagt 141  Q
    | || ||||| |||||||    
T  33450016 tttgtgagacattttagt 33449999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 53272090 - 53272178
Alignment:
Q  58 acttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgagactttttagttaaaa 146  Q
    |||||||||||||||  ||||||| |||| || ||  |||||||||||||| ||| || | |||||| || |||||||||||| |||||    
T  53272090 acttataaaatgtctattggtattcaaaagtatacatattttaatggattcttttatggagtggattttgtgagactttttagctaaaa 53272178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 47685324 - 47685408
Alignment:
Q  57 aacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgagactttttagt 141  Q
    |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || ||||| |||| ||||||||||||||||    
T  47685324 aacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatagattttgcgagactttttagt 47685408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 23697146 - 23697406
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23697146 aagacatcaaaatccgtttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 23697245  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttccnnnnnnntttta-nnn 214  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||       |||||        
T  23697246 taatggattgtgtgagactttttagttaaaatacactcatccaacaatctcaaacaaactctttagattttgtaacactcttccaaattttttttatttt 23697345  T
Q  215 nnnnnacgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
         ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  23697346 tttatacgtttcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23697406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 85890 - 86073
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  85890 aagacatcaaaatccgttggtattcaattaagatttttaagaacttataaaatgtctcgtggtattgaaaattagacggattttactggattcatttgtg 85989  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttcc 199  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  85990 taatggattgtgtgagactttttagttaaaatacactcatccaacaatctcacacaaactcttaagattttgtaatactcttcc 86073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 23715602 - 23715862
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23715602 aagacatcaaaatccgtttgcattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 23715701  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttccnnnnnnntttta-nnn 214  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||        ||||        
T  23715702 taatggattgtgtgagactttttagttaaaatacactcatccaacaatctcaaacaaactctttagattttgtaacactcttccaaaaaaaatttatttt 23715801  T
Q  215 nnnnnacgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
         ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  23715802 tttatacgtttcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23715862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 23734058 - 23734318
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23734058 aagacatcaaaatccgtttgcattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 23734157  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttccnnnnnnntttta-nnn 214  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||        ||||        
T  23734158 taatggattgtgtgagactttttagttaaaatacactcatccaacaatctcaaacaaactctttagattttgtaacactcttccaaaaaaaatttatttt 23734257  T
Q  215 nnnnnacgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
         ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  23734258 tttatacgtttcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23734318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 23753721 - 23753982
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23753721 aagacatcaaaatctgtttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaagttagacggattttaatggattcatttgtg 23753820  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttccnnnnnnntttt--ann 213  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||       ||||         
T  23753821 taatgaattgtgtgagactttttagttaaaatacactcatccaacaatctcacacaaactctttagattttgtaatactcttccaaattcttttttattt 23753920  T
Q  214 nnnnnnacgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
          ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  23753921 ttttatacgtttcttccaaattcttttctattctattgtaacaatggcaggttatatatttt 23753982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 24150543 - 24150488
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  24150543 acgtttcttccaaattcttttctgttctactgtaaaaatggcaggttatatatttt 24150488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 30589215 - 30589270
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  30589215 acgtttcttccaaattcttttctgttctactgtaacaatgacaggttatatatttt 30589270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 36054713 - 36054660
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatt 273  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  36054713 acgtttcttccaaattcttttctgttctactgtaacaatggcagattatatatt 36054660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 26293276 - 26293224
Alignment:
Q  223 tttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  26293276 tttcttccaaattcttttctattctactgtaacaatggcaggttatatatttt 26293224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 19551872 - 19551818
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  19551872 acgtttcttccaaattcttttctgttctactgt-acaatggcaggttatatatttt 19551818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 26005569 - 26005514
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  26005569 acgtttcttccaaattcttttctgttctactgtaacaatgacatgttatatatttt 26005514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 50900144 - 50900089
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  50900144 acgtttcttccaaattcttttctgttatactctaacaatggcatgttatatatttt 50900089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 38629509 - 38629456
Alignment:
Q  222 gtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  38629509 gtttctttcaaattcttttctgttctactgtaacaatggcagattatatatttt 38629456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 46749398 - 46749445
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtct 72  Q
    |||||||||| |||||||||||||||||| | ||||||||||||||||    
T  46749398 aaatccgttgatattcaattaagatttctcacaacttataaaatgtct 46749445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 44041948 - 44041854
Alignment:
Q  58 acttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgagactttttagtt-aaaatacac 151  Q
    |||||||||||||||| |||||||||||| ||    ||||||||| ||||| |||||| ||||||||    |||||||||||||| |||||||||    
T  44041948 acttataaaatgtctcttggtattgaaaagtatgtagattttaatagattcttttgtggaatggatttcatgagactttttagttgaaaatacac 44041854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 45926881 - 45926768
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||||||||||||||||||| ||||||| | |||||||||||| ||    |||||| |||| | ||  ||||||||||||||| ||| || || | |||    
T  45926881 aaatccgttggtattcaattaggatttctcacaacttataaaatctcattcggtattcaaaaattgatagattttaatggattcttttatgcaacgtatt 45926782  T
Q  125 gtgcgagacttttt 138  Q
     || ||||||||||    
T  45926781 ttgtgagacttttt 45926768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 10104829 - 10104782
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtct 72  Q
    |||||| |||||||||||||| ||||||| | ||||||||||||||||    
T  10104829 aaatccattggtattcaattaggatttctcacaacttataaaatgtct 10104782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 44701688 - 44701811
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    ||||||| |||||||||||||| ||||||||||  | |||| || |||||  ||||||| |||| |  |  |||||| ||||||||||   || ||||||    
T  44701688 caaaatctgttggtattcaattgagatttctaatgatttatgaattgtctattggtattcaaaagtctatagattttgatggattcatggatggaatgga 44701787  T
Q  123 ttgtgcgagactttttagttaaaa 146  Q
    || |  ||||||||||||||||||    
T  44701788 ttttatgagactttttagttaaaa 44701811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 10215977 - 10215931
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtc 71  Q
    |||||| |||||||||||||| ||||||| | |||||||||||||||    
T  10215977 aaatccattggtattcaattaggatttctcacaacttataaaatgtc 10215931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 10225606 - 10225560
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtc 71  Q
    |||||| |||||||||||||| ||||||| | |||||||||||||||    
T  10225606 aaatccattggtattcaattaggatttctcacaacttataaaatgtc 10225560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 43489045 - 43489227
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489045 aagacatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 43489144  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttc 198  Q
    |||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  43489145 taatggattgtgtgagactttttagttaaaatacactcatctaacaatctcacacaaactcttgagattttgtaatactcttc 43489227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 42366190 - 42366361
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    |||| |||||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  42366190 aaattcgttggtattcatttgagatttctaggaacttataaaatgtctcttggtattgaaaattagacagattttaatggattcatttgtggaatagatt 42366289  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactct 196  Q
    ||| |||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||||    
T  42366290 gtgtgagactttttagttaaaatagactcatctaacaatctcacacaaactcttgagattttgtgatactct 42366361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 40264991 - 40264936
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40264991 acgtttcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 40264936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 29259985 - 29259930
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  29259985 acgtttcttccaaattcttttctgttctattgtaacaatggcaggttatatatttt 29259930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 41965511 - 41965456
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  41965511 acgtttcttccaaattcttttctgttctactgtaaaaatggcaggttatatatttt 41965456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 43605078 - 43605023
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  43605078 acgtttcttccaaattcttttttgttctactgtaacaatggcaggttatatatttt 43605023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 9457886 - 9457941
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  9457886 acgtttcttccaaattcttttctgttctaccgtaacaatggcaggatatatatttt 9457941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 41965290 - 41965235
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  41965290 acgtttattccaaattcttttctgttctaatgtaacaatggcaggttatatatttt 41965235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 8502779 - 8502896
Alignment:
Q  24 aaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 123  Q
    |||||||| |||||||||||||||||||   | |||||| ||| |||||  ||||||| ||||||  |||||||||||||||||  | || |||||||||    
T  8502779 aaaatccggtggtattcaattaagattttgcacaacttaaaaattgtctattggtatttaaaattctacggattttaatggattgttgtgagtaatggat 8502878  T
Q  124 tgtgcgagactttttagt 141  Q
    | |  |||||||||||||    
T  8502879 tttatgagactttttagt 8502896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 10127684 - 10127824
Alignment:
Q  35 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacg-gattttaatggattcatttgtgtaatggattgtgcgaga- 132  Q
    ||||||||| ||||||| | || |||||||||||||||  |||||||||||| || | | ||||| || |||||| || |||||||||||| || ||||     
T  10127684 gtattcaatcaagatttgttaggacttataaaatgtctattggtattgaaaaatacaagagatttaaaaggattctttagtgtaatggattttgagagat 10127783  T
Q  133 ctttttagttaaaatacactcatccgacaatctcacacaaa 173  Q
     ||||||||||||||||| |||  | ||||||||| |||||    
T  10127784 ttttttagttaaaatacattcactcaacaatctcatacaaa 10127824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 41386577 - 41386525
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatat 272  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  41386577 acgtttcttccaaattcttttctgttctattgtaacaatcgcaggttatatat 41386525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 2113170 - 2113225
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||    
T  2113170 acgtttcttccaaaatcttttctgctctactgtaataatggcaggttatatatttt 2113225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 7148414 - 7148469
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||||||||||||||||||| |||| ||||||||| || |||||||||||    
T  7148414 acgtttcttccaaattcttttctgttttactgtaacaatggtagattatatatttt 7148469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 42275351 - 42275402
Alignment:
Q  222 gtttcttccaaattcttttctgttctactttaacaatggcaggttatatatt 273  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  42275351 gtttcttccaaattcttttttgttctactgtaacaatggtaggttatatatt 42275402  T

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Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 43489259 - 43489314
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  43489259 acgtttcatccaaattcttttttgttctactgtaacaatggcagattatatatttt 43489314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 10796067 - 10796026
Alignment:
Q  234 ttcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10796067 ttcttttctgttctactgtaacaatggcaggttatatatttt 10796026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 17790581 - 17790712
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaat-tagacggattttaatggattcatt--tgtgtaat 119  Q
    ||||||| ||||||||||||| ||||||| | || |||||||||||||||  ||||||| ||||| ||||  |||||  |  ||||| ||  ||||||||    
T  17790581 caaaatctgttggtattcaatcaagatttgttaggacttataaaatgtctattggtattaaaaatataga--gatttggagagattctttaatgtgtaat 17790678  T
Q  120 ggattgtgcgagac-tttttagttaaaatacact 152  Q
    ||||| || ||||| |||||||||||||||||||    
T  17790679 ggattttgagagacttttttagttaaaatacact 17790712  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 4655421 - 4655458
Alignment:
Q  222 gtttcttccaaattcttttctgttctactttaacaatg 259  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  4655421 gtttcttccaaattcttttctgttctactgtaacaatg 4655458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 24318080 - 24318185
Alignment:
Q  41 aattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgagactttttag 140  Q
    ||||| ||||||| | ||||||||||||||||   |||||| |||| | ||  |||||| |||||||| ||| || |||||||| || |||||||||| |    
T  24318080 aattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttgatggattcttttatggaatggattttgtgagactttttgg 24318179  T
Q  141 ttaaaa 146  Q
    ||||||    
T  24318180 ttaaaa 24318185  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 39038989 - 39038938
Alignment:
Q  95 attttaatggattcatttgtgtaatggattgtgcgagactttttagttaaaa 146  Q
    |||||||||||||| ||||| ||||| ||| || ||||||||||||||||||    
T  39038989 attttaatggattcttttgtataatgaattttgtgagactttttagttaaaa 39038938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 2112947 - 2113055
Alignment:
Q  33 tggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgaga 132  Q
    |||||||||||| |||||||  | |||||| ||| |||||  ||||||| |||| |  |||||||||||||||||  | || |||||||||| || ||||    
T  2112947 tggtattcaattgagatttcgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgaga 2113046  T
Q  133 ctttttagt 141  Q
     | ||||||    
T  2113047 ttgtttagt 2113055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 4302736 - 4302628
Alignment:
Q  33 tggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgaga 132  Q
    |||||||||||| ||||||   | |||||| ||| |||||  | ||||| ||||||  | |||||||||||||||  | || ||||||||||  ||||||    
T  4302736 tggtattcaattgagattttgcacaacttaaaaattgtctattagtattcaaaattgtaaggattttaatggattgttgtgagtaatggatttagcgaga 4302637  T
Q  133 ctttttagt 141  Q
    |||||||||    
T  4302636 ctttttagt 4302628  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 14061727 - 14061815
Alignment:
Q  58 acttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgagactttttagttaaaa 146  Q
    |||||||||||||||  ||||||| |||| || ||  |||||||||||||| ||| |  | |||||| || |||||||||||| |||||    
T  14061727 acttataaaatgtctgttggtattcaaaagtatacaaattttaatggattcttttatagagtggattttgtgagactttttagctaaaa 14061815  T

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Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 33474669 - 33474917
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33474669 aaattcgttggtattcaattaagatttctaagaacttataaaatatcttgtggtattgaaaattagacggattttaattgattcatttgtgtaatggatt 33474768  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttccnnnnnnntttta-nnnnnnnnacgt 223  Q
    ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||         ||||    
T  33474769 gtgtgagactttttagttaaaatacactcatccaacaatctcacacaaactcttgagattttgtaatactcttcc---aaatttttatttttttttacgt 33474865  T
Q  224 ttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  33474866 ttcttccaaattcttttctgttctactgtaacaatggcatgttatatatttt 33474917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 12253336 - 12253154
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  12253336 aagacatcaaaatctgttggtattcaattaagatttctaagaacttataaaatgtctcatggtattgaaaattagacgaattttaatggattcatttgtg 12253237  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttcc 199  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||    
T  12253236 taatggattgtgtgagactttttagttaaaatacactcatccaacaatcccacacaaactcttgaga-tttataatactcttcc 12253154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 3634353 - 3634473
Alignment:
Q  26 aatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattg 125  Q
    |||||||||||||||||||||||||||| | |||||||||||||| |  ||||||| |||| |  |  |||||| |||||||| ||| || ||||||||     
T  3634353 aatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaatggattt 3634452  T
Q  126 tgcgagactttttagttaaaa 146  Q
    || ||||||||||||||||||    
T  3634453 tgagagactttttagttaaaa 3634473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 152231 - 152286
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  152231 acgtttcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 152286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 43057385 - 43057330
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43057385 acgtttcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 43057330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 47914040 - 47913985
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  47914040 acgtttcttccaaattcttttctgttctactgtaacaatggtaggttatatatttt 47913985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 30111181 - 30111234
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatt 273  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  30111181 acgtttcttccaaattcttttctgttctactgtaacaatggcagattatatatt 30111234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 42678121 - 42678008
Alignment:
Q  33 tggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgaga 132  Q
    ||||||||||||||||||| ||  ||||||||||||||||  ||||||| |||| |   | ||||||||||||||| |||||  |||||||| |  ||||    
T  42678121 tggtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttatgaga 42678022  T
Q  133 ctttttagttaaaa 146  Q
    ||||||||||||||    
T  42678021 ctttttagttaaaa 42678008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 12253127 - 12253072
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  12253127 acgtttctttcaaattcttttctgttctactataacaatggcaagttatatatttt 12253072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 37042499 - 37042357
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||||| | ||||||||||||||||||| | |||||||||| | |||| ||||||| |||| || |  ||||| |||| |||| || | | ||||||||    
T  37042499 aaatccggtagtattcaattaagatttctcacaacttataaattatctcatggtattcaaaaatacatagatttaaatgaattctttggcgaaatggatt 37042400  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaatctcac 168  Q
     || |||| ||||||||||||||||| | |||| ||||||||||    
T  37042399 ttgtgaga-tttttagttaaaatacatttatccaacaatctcac 37042357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 27418351 - 27418298
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatt 273  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  27418351 acgtttcttccaaattcttttctgttctactataacaatgacagattatatatt 27418298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 46037288 - 46037115
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    |||||||||||||||||||||| |||||||| |  |||||| || |||||  ||||||| |||| |  |  |||||| |||||||| |   || ||||||    
T  46037288 caaaatccgttggtattcaattgagatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttgatggattcttggatggaatgga 46037189  T
Q  123 ttgtgcgagactttttagttaa----------aatacactcatccgacaatctcacacaaactcttgagatttt 186  Q
    || || ||||||||||||||||          ||||| ||||||| |||||||||||||||| |||||||||||    
T  46037188 ttttgtgagactttttagttaaaaatataaataatactctcatccaacaatctcacacaaacccttgagatttt 46037115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 47912629 - 47912668
Alignment:
Q  236 cttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  47912629 cttttctgttctactgtaacaatggtaggttatatatttt 47912668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 32630915 - 32630967
Alignment:
Q  94 gattttaatggattcatttgtgtaatggattgtgcgagactttttagttaaaa 146  Q
    ||||||||||||||| ||  | ||||||||| || ||||||||||||||||||    
T  32630915 gattttaatggattccttgatataatggattttgtgagactttttagttaaaa 32630967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 35172583 - 35172400
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35172583 aagacatcaaaatccgttggtattcaattaagatttataagaacttataaaatgtttcgtggtattgaaaattagacggattttaatggattcatttgtg 35172484  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttcc 199  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  35172483 taatggattgtgtgagactttttagttaaaatacactcttccaacaatctcacacaaactcttgagattttgtaatactcttcc 35172400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 7488075 - 7487892
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7488075 aagacatcaaaattcgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 7487976  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttcc 199  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  7487975 taatggattgtgtgagactttttagttaaaataaactcatccaacaatttcacacaaaatcttgagattttgtaatactcttcc 7487892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 21736550 - 21736367
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21736550 aagacatcaaaatccgttggtattcaattaagatttctaagaatttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 21736451  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttcc 199  Q
    |||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  21736450 taatggattgtgtgagactttttagttaaaataaactcatctaacaatctcacacaaactcttcagattttgtaatactcttcc 21736367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 36598404 - 36598233
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  |||||||||| |||||| |||| ||| ||||    
T  36598404 aaatccgttggtattcaattaagatttctaggaacttataaaatgtctcttggtattgaaaattagagagattttaatgaattcatctgtgaaatagatt 36598305  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactct 196  Q
    ||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||    
T  36598304 gtgtgagactttttatttaaaataaactcatccaacaatctcacacaaactcttgaaattttgtgatactct 36598233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 14920559 - 14920391
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||| ||||    
T  14920559 aaatccgttggtattcaattgagatttctaggaacttataaaatgtctcttggtattgaaaattagagagattttaatggattcatttgtggaatagatt 14920460  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactct 196  Q
    ||| |||||||||||||||||||| ||| || | |||| ||||||||||||||||||||||||| |||||||    
T  14920459 gtgtgagactttttagttaaaatagact-at-ctacaa-ctcacacaaactcttgagattttgtgatactct 14920391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 16146971 - 16147108
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||||||||  |||||||| |||||||||||||||| ||||||||||  ||| ||||||||||| |||||||||||| ||||||||| || ||||||||    
T  16146971 aaatccgttgacattcaattgagatttctaagaacttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggatt 16147070  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaa 162  Q
    ||| ||||||||||| ||||||||||||||||| ||||    
T  16147071 gtgtgagactttttaattaaaatacactcatccaacaa 16147108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 16155557 - 16155694
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||||||||| |||||||| ||||||||||||| || |||||||| || |||||||||| |||| | ||||||||||| |||||||| || ||| ||||    
T  16155557 aaatccgttggcattcaattgagatttctaagaaattttaaaatgtttcttggtattgaatattaaatggattttaatgaattcatttatggaattgatt 16155656  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaa 162  Q
    ||| ||||||||||| ||||||||||| ||||| ||||    
T  16155657 gtgtgagactttttaattaaaatacacgcatccaacaa 16155694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 6289217 - 6289162
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6289217 acgtttattccaaattcttttctgttctactgtaacaatggcaggttatatatttt 6289162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 29941325 - 29941380
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  29941325 acgtttcttccaaattcttttctgttctactgtaacaatggcatgttatatatttt 29941380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 7487865 - 7487810
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||    
T  7487865 acgtttcttcaaaattcttttctgttctactgtaacaatgacagattatatatttt 7487810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 21736340 - 21736289
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatata 271  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  21736340 acgtttctttcaaattcttttctgttctactgtaacaatggcatgttatata 21736289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 15284466 - 15284341
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtatt-gaaaattagacggattttaatggattcatttgtgtaatgg 121  Q
    ||||||||||||||||||||||||||||||| |  |||||| || |||||  |||||||  |||| |  |  ||||||||||||||| |||||  |||||    
T  15284466 caaaatccgttggtattcaattaagatttctcatgacttatgaattgtctattggtattacaaaagtttatagattttaatggattcttttgtacaatgg 15284367  T
Q  122 attgtgcgag-actttttagttaaaa 146  Q
    ||| || ||| |||||||||||||||    
T  15284366 attttgtgagtactttttagttaaaa 15284341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 37981769 - 37981815
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtc 71  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||||    
T  37981769 aaatccgttggtattcaattaggatttctcacaacttataaaatgtc 37981815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 34028869 - 34028752
Alignment:
Q  24 aaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 123  Q
    |||||||  |||||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||| | |||||||||||||||  |  | |||||||||    
T  34028869 aaaatccagtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattataaggattttaatggattgttacgagtaatggat 34028770  T
Q  124 tgtgcgagactttttagt 141  Q
    | || |||||||||||||    
T  34028769 tttgtgagactttttagt 34028752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 24193414 - 24193306
Alignment:
Q  33 tggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgaga 132  Q
    |||||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||||||| || ||||    
T  24193414 tggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgaga 24193315  T
Q  133 ctttttagt 141  Q
    |||||||||    
T  24193314 ctttttagt 24193306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 35172377 - 35172338
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatg 259  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  35172377 acgtttcttccaaattcttttatgttctactgtaacaatg 35172338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 2288604 - 2288634
Alignment:
Q  23 caaaatccgttggtattcaattaagatttct 53  Q
    |||||||||||||||||||||||||||||||    
T  2288604 caaaatccgttggtattcaattaagatttct 2288634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 11534982 - 11535099
Alignment:
Q  24 aaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 123  Q
    |||||||  ||| |||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||||||    
T  11534982 aaaatccagtggaattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggat 11535081  T
Q  124 tgtgcgagactttttagt 141  Q
    | || |||||||||||||    
T  11535082 tttgtgagactttttagt 11535099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 18176397 - 18176284
Alignment:
Q  33 tggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgaga 132  Q
    |||||||||||| ||||||   | | ||||||||||||||  ||||||| ||||||     |||||||||||||||  ||||  | |||||| || ||||    
T  18176397 tggtattcaattgagattttataaatcttataaaatgtctattggtattcaaaattcttgagattttaatggattctattgtagagtggattttgtgaga 18176298  T
Q  133 ctttttagttaaaa 146  Q
    ||||||||||||||    
T  18176297 ctttttagttaaaa 18176284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 3604398 - 3604216
Alignment:
Q  16 aagatatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtg 115  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  3604398 aagacatcaaaatccgttggtattcaattaagatttttaagaacttataaaatgtctcgtggtattgaaaattagacagattttaatggattcatttgcg 3604299  T
Q  116 taatggattgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttcc 199  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3604298 taatggattgtgtgagac-ttttagttaaaatacactcatccaacaatctcacacaaactcttgagattttgtaatactcttcc 3604216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 378387 - 378543
Alignment:
Q  31 gttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcga 130  Q
    |||||||||||||| ||||||||||||||||||||||||||||  | | ||||||||| ||  ||||||||||||||| | | || ||||||||||| ||    
T  378387 gttggtattcaattgagatttctaagaacttataaaatgtctctcgatgttgaaaatttgatagattttaatggattcttctatggaatggattgtgtga 378486  T
Q  131 gactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttg 187  Q
     ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  378487 aactttttagttgaaatatactcatccaacaatctcacataaactcttgagattttg 378543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 28594377 - 28594256
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||   |||||| |||| | ||  ||||||||||||||| ||| | |||||||||    
T  28594377 aaatccgttggtattcaattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttaatggattcttttatataatggatt 28594278  T
Q  125 gtgcgagactttttagttaaaa 146  Q
     || ||||||||||||||||||    
T  28594277 ttgtgagactttttagttaaaa 28594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 3604179 - 3604124
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  3604179 acgtttcttccaaattcttttttgttctactgtagcaatggcaggttatatatttt 3604124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 13950506 - 13950451
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  13950506 acgtttctttcaaattcttttctgttctactgtaacaatggcagattatatatttt 13950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 40410969 - 40411024
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  40410969 acgtttcttccaaattcttttctattctactgtaacaatgacaggttatatatttt 40411024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 27786362 - 27786472
Alignment:
Q  36 tattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgagactt 135  Q
    |||||||||| ||||||| | |||||||||||||||    |||||| |||| | ||  ||||||||||||||| ||| || |||||||| || |||||||    
T  27786362 tattcaattatgatttctcacaacttataaaatgtcattcggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtgagactt 27786461  T
Q  136 tttagttaaaa 146  Q
    |||||||||||    
T  27786462 tttagttaaaa 27786472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 2276143 - 2276020
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    |||||| ||||||||||||||||| |||||| |  |||||| || |||||  || |||| |||| |  |  ||||||||||||||| ||||| |||||||    
T  2276143 caaaattcgttggtattcaattaaaatttctcatgacttatgaattgtctattgatattcaaaagtctatagattttaatggattcttttgtataatgga 2276044  T
Q  123 ttgtgcgagactttttagttaaaa 146  Q
    || || |||| |||||||||||||    
T  2276043 ttttgtgagattttttagttaaaa 2276020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 26795448 - 26795401
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtct 72  Q
    |||||| |||||||||||||| ||||||| | ||||||||||||||||    
T  26795448 aaatccattggtattcaattaggatttctcacaacttataaaatgtct 26795401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 26806512 - 26806465
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtct 72  Q
    |||||| |||||||||||||| ||||||| | ||||||||||||||||    
T  26806512 aaatccattggtattcaattaggatttctcacaacttataaaatgtct 26806465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 9689281 - 9689235
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtc 71  Q
    |||||||||||||||||||| |||||||| |  ||||||||||||||    
T  9689281 aaatccgttggtattcaattgagatttctcattacttataaaatgtc 9689235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 6828729 - 6828612
Alignment:
Q  24 aaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 123  Q
    |||||||  |||||||||||| ||||||   | |||||| ||| |||||  || |||| ||||||  | |||||||||||||||  | || |||||||||    
T  6828729 aaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattgatattcaaaattgtaaggattttaatggattgttatgagtaatggat 6828630  T
Q  124 tgtgcgagactttttagt 141  Q
    | || |||||||||||||    
T  6828629 tttgtgagactttttagt 6828612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 40460504 - 40460388
Alignment:
Q  35 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgagact 134  Q
    |||||||| |||||||| |   |||||||||| |||||| ||||||| |||| || |    |||||||  |||| |||||||||| |||| |||||||||    
T  40460504 gtattcaaataagatttttccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtgtaatagattttgcgagact 40460406  T
Q  135 ttttagtt-aaaatacac 151  Q
    |||||||| |||||||||    
T  40460405 ttttagttgaaaatacac 40460388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 39758120 - 39758293
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  | | |||||||||||||||||||| | ||||||||    
T  39758120 aaatctgttggtattcaattaagatttctaagaacttataaaatgtcttttggtattgaaaatatg-cagattttaatggattcatttggggaatggatt 39758218  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttcc 199  Q
    ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  39758219 gtgtgagactttttagttgaaatacactcatccaacaatctcacacaaactcttgagattgtgtgatactcttcc 39758293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 39763474 - 39763647
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  | | |||||||||||||||||||| | ||||||||    
T  39763474 aaatctgttggtattcaattaagatttctaagaacttataaaatgtcttttggtattgaaaatatg-cagattttaatggattcatttggggaatggatt 39763572  T
Q  125 gtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactcttcc 199  Q
    ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  39763573 gtgtgagactttttagttgaaatacactcatccaacaatctcacacaaactcttgagattgtgtgatactcttcc 39763647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 26882530 - 26882478
Alignment:
Q  223 tttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26882530 tttcttccaaattcttttctgttctactataacaatggcaggttatatatttt 26882478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 43553682 - 43553853
Alignment:
Q  24 aaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 123  Q
    |||||||||| | |||||||| |||||||| | |||||||||| |||||| ||||||| |||| || |   ||||||||  |||| || ||| |||||||    
T  43553682 aaaatccgttagcattcaattgagatttctcacaacttataaattgtctcttggtattaaaaaatacataaattttaataaattctttggtgaaatggat 43553781  T
Q  124 tgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttgtaatactct 196  Q
    | |  || | ||||||||||||||||| |||||| |||||||| ||||||  ||||||||||||  |||||||    
T  43553782 tttttgaaa-tttttagttaaaatacattcatccaacaatctctcacaaaaccttgagattttgacatactct 43553853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 45318841 - 45318896
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  45318841 acgtttcttccaaattcttttctgttatactgtaacaatggcaggttatatatttt 45318896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 52705765 - 52705820
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  52705765 acgtttcttccaaattcttttctgttatactgtaacaatggcagattatatatttt 52705820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 19007518 - 19007343
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    |||||||||||||||||||||| |||||||| |  |||||| || |||||  ||||||| |||| |  |  |||||| |||||||| |   || ||||||    
T  19007518 caaaatccgttggtattcaattgagatttctcatgacttatgaattgtctattggtattaaaaagtctatagattttgatggattcttggatggaatgga 19007419  T
Q  123 ttgtgcgagactttttagttaa----------aatacactcatccgacaatctcacacaaactcttgagattttgt 188  Q
    || || ||||||||||||||||          ||||| ||||||| |||||||||||||||| |||||||||||||    
T  19007418 ttttgtgagactttttagttaaaaatataaataatactctcatccaacaatctcacacaaacccttgagattttgt 19007343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 48194736 - 48194900
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    |||||||||||||||||||||| |||||||| |  |||||| || ||||   ||||||| |||| |  |  |||||| |||||||| |   || ||||||    
T  48194736 caaaatccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaatgga 48194835  T
Q  123 ttgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttg 187  Q
    || || ||||||||||||||||||    ||| ||| ||||||||||| |||| ||||||||||||    
T  48194836 ttttgtgagactttttagttaaaaatatctcttccaacaatctcacagaaacccttgagattttg 48194900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 45535131 - 45535186
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||||||||||||||||||||| || | ||||||||||| | ||||||||||    
T  45535131 acgtttcttccaaattcttttctgttttattgtaacaatggcaagatatatatttt 45535186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 1928341 - 1928224
Alignment:
Q  24 aaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 123  Q
    |||||||  |||||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||||||    
T  1928341 aaaatccagtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgagtaatggat 1928242  T
Q  124 tgtgcgagactttttagt 141  Q
    | || |||||||||||||    
T  1928241 tttgtgagactttttagt 1928224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 36402394 - 36402511
Alignment:
Q  24 aaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 123  Q
    |||||||  |||||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||||||    
T  36402394 aaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggat 36402493  T
Q  124 tgtgcgagactttttagt 141  Q
    | || |||||||||||||    
T  36402494 tttgtgagactttttagt 36402511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 39758313 - 39758370
Alignment:
Q  220 acgtttcttccaaattcttttctgttc--tactttaacaatggcaggttatatatttt 275  Q
    |||||||||| ||||||||||||||||  |||| | || |||||||||||||||||||    
T  39758313 acgtttcttcaaaattcttttctgttctatactatgacgatggcaggttatatatttt 39758370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 39763667 - 39763724
Alignment:
Q  220 acgtttcttccaaattcttttctgttc--tactttaacaatggcaggttatatatttt 275  Q
    |||||||||| ||||||||||||||||  |||| | || |||||||||||||||||||    
T  39763667 acgtttcttcaaaattcttttctgttctatactatgacgatggcaggttatatatttt 39763724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 27198419 - 27198540
Alignment:
Q  25 aaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 124  Q
    ||||||||||||||| |||| |||||||| |  |||| |||||||||   ||||||| |||| || |  ||||||||||||||| ||| |  | | ||||    
T  27198419 aaatccgttggtattgaattgagatttctcattacttctaaaatgtccattggtattcaaaaatatatagattttaatggattcttttatagagttgatt 27198518  T
Q  125 gtgcgagactttttagttaaaa 146  Q
     || ||||||| ||||||||||    
T  27198519 ttgtgagacttcttagttaaaa 27198540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 4289114 - 4289202
Alignment:
Q  58 acttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgagactttttagttaaaa 146  Q
    ||||||||||||| |  ||||||| |||| || || ||||||||||||||| ||| || | |||||| || |||| ||||||| |||||    
T  4289114 acttataaaatgtttgctggtattcaaaagtatacagattttaatggattcttttatggagtggattttgtgagaatttttagctaaaa 4289202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 11732 - 11612
Alignment:
Q  26 aatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattg 125  Q
    |||||||||||||||||||||||||||| | |||||||||||||| |  ||||||| |||| |  |  |||||| |||||||| ||| || ||||||||     
T  11732 aatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaatggattt 11633  T
Q  126 tgcgagactttttagttaaaa 146  Q
    || ||||||||||||||||||    
T  11632 tgagagactttttagttaaaa 11612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 1813 - 1700
Alignment:
Q  33 tggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgaga 132  Q
    ||||||||||||||||||| ||  ||||||||||||||||  ||||||| |||| |   | ||||||||||||||| |||||  |||||||| || ||||    
T  1813 tggtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttgtgaga 1714  T
Q  133 ctttttagttaaaa 146  Q
    ||||||||||||||    
T  1713 ctttttagttaaaa 1700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 21154 - 21099
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  21154 acgtttcttccaaattcttttctgttctactgtaacaatggcaggatatatatttt 21099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 29865459 - 29865404
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  29865459 acgtttcttccaaattcttttctgttctactgtaacaatggcaggatatatatttt 29865404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 6476421 - 6476368
Alignment:
Q  220 acgtttcttccaaattcttttctgttctactttaacaatggcaggttatatatt 273  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  6476421 acgtttcttccaaattcttttctgttctactgtaacaatgccatgttatatatt 6476368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 7100310 - 7100474
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    |||||||||||||||||||||| |||||||| |  |||||| || ||||   ||||||| |||| |  |  |||||| |||||||| |   || ||||||    
T  7100310 caaaatccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaatgga 7100409  T
Q  123 ttgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttg 187  Q
    || || ||||||||||||||||||    ||| ||| ||||||||||| |||| ||||||||||||    
T  7100410 ttttgtgagactttttagttaaaaatatctcttccaacaatctcacagaaacccttgagattttg 7100474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 8794320 - 8794156
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    |||||||||||||||||||||| |||||||| |  |||||| || ||||   ||||||| |||| |  |  |||||| |||||||| |   || ||||||    
T  8794320 caaaatccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaatgga 8794221  T
Q  123 ttgtgcgagactttttagttaaaatacactcatccgacaatctcacacaaactcttgagattttg 187  Q
    || || ||||||||||||||||||    ||| ||| ||||||||||| |||| ||||||||||||    
T  8794220 ttttgtgagactttttagttaaaaatatctcttccaacaatctcacagaaacccttgagattttg 8794156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 5957275 - 5957398
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    ||||||||||||||||||||||||||||||| |  |||||| || |||||  ||||||| |||| |  |  |||||||||  |||  || || |||||||    
T  5957275 caaaatccgttggtattcaattaagatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttaatatattttttcgtataatgga 5957374  T
Q  123 ttgtgcgagactttttagttaaaa 146  Q
    || || ||||||||||||||||||    
T  5957375 ttttgtgagactttttagttaaaa 5957398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 709060 - 709235
Alignment:
Q  23 caaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatgga 122  Q
    |||||||||||||||||||||| | |||||| |  |||||| || |||||  ||||||| |||| |  |  |||||| |||||||| |   |||||||||    
T  709060 caaaatccgttggtattcaattgaaatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttgatggattcttggatgtaatgga 709159  T
Q  123 ttgtgcgagactttttagttaa----------aatacactcatccgacaatctcacacaaactcttgagattttgt 188  Q
    || || ||||||||||||||||          ||||| ||||||| |||||||||||||||  |||||||||||||    
T  709160 ttttgtgagactttttagttaaaaatataaataatactctcatccaacaatctcacacaaatccttgagattttgt 709235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 30878008 - 30878116
Alignment:
Q  33 tggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgaga 132  Q
    |||||||||||| ||||||   | | |||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||||||| || ||||    
T  30878008 tggtattcaattcagattttgtacagcttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgaga 30878107  T
Q  133 ctttttagt 141  Q
    |||||||||    
T  30878108 ctttttagt 30878116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 34522 - 34469
Alignment:
Q  222 gtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  34522 gtttcttctaaattcttttctgttctactgtaacaatggcaggttatatatttt 34469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 81490 - 81437
Alignment:
Q  222 gtttcttccaaattcttttctgttctactttaacaatggcaggttatatatttt 275  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  81490 gtttcttctaaattcttttctgttctactgtaacaatggcaggttatatatttt 81437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 81710 - 81602
Alignment:
Q  33 tggtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgcgaga 132  Q
    |||||||||||| ||||||   | |||||| ||| |||||| ||||||| |||| |  |||||||||||||||||  | || |||||||||| || ||||    
T  81710 tggtattcaattgagattttgcataacttaaaaattgtctcctggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgaga 81611  T
Q  133 ctttttagt 141  Q
     | ||||||    
T  81610 ttgtttagt 81602  T

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