View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2047_high_17 (Length: 237)

Name: NF2047_high_17
Description: NF2047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2047_high_17
NF2047_high_17
[»] chr3 (5 HSPs)
chr3 (79-222)||(42250236-42250379)
chr3 (89-150)||(20932081-20932142)
chr3 (103-150)||(32975236-32975283)
chr3 (137-177)||(3082884-3082924)
chr3 (137-177)||(45683088-45683128)
[»] chr6 (1 HSPs)
chr6 (89-177)||(31437382-31437470)
[»] chr4 (4 HSPs)
chr4 (94-161)||(37330187-37330253)
chr4 (126-177)||(17999612-17999663)
chr4 (89-154)||(23084788-23084853)
chr4 (108-177)||(29336465-29336533)
[»] chr5 (3 HSPs)
chr5 (84-163)||(30277761-30277844)
chr5 (126-176)||(35647468-35647518)
chr5 (108-177)||(30252757-30252825)
[»] chr1 (2 HSPs)
chr1 (108-177)||(14500776-14500844)
chr1 (92-174)||(49380530-49380612)
[»] chr2 (4 HSPs)
chr2 (89-177)||(26405721-26405808)
chr2 (137-177)||(25188018-25188058)
chr2 (126-177)||(20639139-20639190)
chr2 (89-177)||(42490877-42490964)
[»] chr7 (2 HSPs)
chr7 (89-177)||(12614775-12614862)
chr7 (89-177)||(48573799-48573886)
[»] scaffold1430 (1 HSPs)
scaffold1430 (103-150)||(177-224)
[»] chr8 (1 HSPs)
chr8 (87-177)||(18918722-18918811)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 42250236 - 42250379
Alignment:
Q  79 agtacacatatttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgatg 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42250236 agtacacatatttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgatg 42250335  T
Q  179 gaacatattaaataatgtttttgaagtgttgggttggagatatt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42250336 gaacatattaaataatgtttttgaagtgttgggttggagatatt 42250379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 20932081 - 20932142
Alignment:
Q  89 tttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaata 150  Q
    |||||| || ||| ||||||||| ||||| ||||||||| ||||||| ||||||||||||||    
T  20932081 tttttaaaatttataattgaattgatttaatatttcaaatattagataattatgaatgaata 20932142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 32975236 - 32975283
Alignment:
Q  103 aattgaattaatttagtatttcaaaaattagatgattatgaatgaata 150  Q
    ||||||||| ||||| ||||||||| ||||||| ||||||||||||||    
T  32975236 aattgaattgatttaatatttcaaatattagataattatgaatgaata 32975283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 3082924 - 3082884
Alignment:
Q  137 attatgaatgaatagataaattattgattaaatttaatgat 177  Q
    ||||||||| |||||||||||||||| | ||||||||||||    
T  3082924 attatgaataaatagataaattattgttaaaatttaatgat 3082884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 45683088 - 45683128
Alignment:
Q  137 attatgaatgaatagataaattattgattaaatttaatgat 177  Q
    ||||| |||||||||||||||||||| | ||||||||||||    
T  45683088 attataaatgaatagataaattattgttaaaatttaatgat 45683128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 31437470 - 31437382
Alignment:
Q  89 tttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    ||||||||| ||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |  |||||||||||    
T  31437470 tttttataatttataattgaattaatataatatttcaaaaattagataattatgaatgaatagataaattattgttacaatttaatgat 31437382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 37330253 - 37330187
Alignment:
Q  94 ataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattatt 161  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||    
T  37330253 ataaattataattgaattaatttaatatttcaaaaattagataattatgaat-aatagacaaattatt 37330187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 17999612 - 17999663
Alignment:
Q  126 aaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    |||||||||| |||||||||||||| ||| ||||||| | ||||||||||||    
T  17999612 aaaattagataattatgaatgaatatatatattattgttaaaatttaatgat 17999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 23084853 - 23084788
Alignment:
Q  89 tttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagata 154  Q
    ||||| ||| ||| |||||||||| |||| ||||||||||||||  | ||| ||||||||||||||    
T  23084853 tttttgtaatttataattgaattagtttaatatttcaaaaattacttaattgtgaatgaatagata 23084788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 29336465 - 29336533
Alignment:
Q  108 aattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    |||||||| | |||||||||  ||| || ||||||||| |||||||||||||||| | ||||||||||||    
T  29336465 aattaattcaatatttcaaag-ttatataattatgaattaatagataaattattgttcaaatttaatgat 29336533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 30277761 - 30277844
Alignment:
Q  84 acatatttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatg----aatgaatagataaattattga 163  Q
    |||||||||||||| ||| ||||||||||| ||| | ||||||||||||||| ||||||    ||||||||||||||| |||||    
T  30277761 acatatttttataatttataattgaattaaattaatttttcaaaaattagataattatgaataaatgaatagataaatcattga 30277844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 35647468 - 35647518
Alignment:
Q  126 aaaattagatgattatgaatgaatagataaattattgattaaatttaatga 176  Q
    |||||||||| |||| ||||||||||||||| ||||| | |||||||||||    
T  35647468 aaaattagataattaagaatgaatagataaaatattgttaaaatttaatga 35647518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 30252757 - 30252825
Alignment:
Q  108 aattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    |||||||| | ||||| |||||||| || ||||||| |||||| ||||||||||| | ||||||||||||    
T  30252757 aattaattcaatattt-aaaaattatataattatgagtgaatatataaattattgttaaaatttaatgat 30252825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 14500776 - 14500844
Alignment:
Q  108 aattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    |||||||| | |||||||||  ||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  14500776 aattaattcaatatttcaaag-ttatatgattatgaatgaatagataaattattgttaaaatttaatgat 14500844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 49380612 - 49380530
Alignment:
Q  92 ttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaat 174  Q
    ||||||| || ||||||||||||||| ||||| |||||||| || |||  ||||  ||||||||||||||| | |||||||||    
T  49380612 ttataaaatataattgaattaatttaatattttaaaaattaaataatttagaatagatagataaattattgctaaaatttaat 49380530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 26405721 - 26405808
Alignment:
Q  89 tttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    ||||||||| ||| |||| ||||| || | |||||||||| ||| || |||||||||||||| ||||||||||| | ||||||||||||    
T  26405721 tttttataatttataattaaattacttcaatatttcaaaa-ttatataattatgaatgaatatataaattattgttgaaatttaatgat 26405808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 25188018 - 25188058
Alignment:
Q  137 attatgaatgaatagataaattattgattaaatttaatgat 177  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  25188018 attatgaatgaatagataaattattgttaaaatttaatgat 25188058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 20639139 - 20639190
Alignment:
Q  126 aaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    |||||||||| |||||||||||||| ||| ||||||| | ||||||||||||    
T  20639139 aaaattagataattatgaatgaatatatatattattgttaaaatttaatgat 20639190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 42490877 - 42490964
Alignment:
Q  89 tttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    ||||||||| ||| |||| |||||||| | ||||| | || ||| || |||||||||||||| ||||||||||| | ||||| ||||||    
T  42490877 tttttataatttataattaaattaattcaatattttataa-ttatataattatgaatgaatatataaattattgttaaaattaaatgat 42490964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 12614862 - 12614775
Alignment:
Q  89 tttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    ||||||||| ||| |||| |||||||| |  |||| |||| ||| || |||||||||||||| ||||||||||| | ||||||||||||    
T  12614862 tttttataatttataattaaattaattaatcattttaaaa-ttatataattatgaatgaatatataaattattgttaaaatttaatgat 12614775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 48573886 - 48573799
Alignment:
Q  89 tttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    ||||||||| ||| |||| ||||| || | ||||| |||| ||| || |||||||||||||| ||||||||||| | ||||||||||||    
T  48573886 tttttataatttataattaaattatttcaatattttaaaa-ttatataattatgaatgaatatataaattattgttaaaatttaatgat 48573799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1430 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1430
Description:

Target: scaffold1430; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 224 - 177
Alignment:
Q  103 aattgaattaatttagtatttcaaaaattagatgattatgaatgaata 150  Q
    ||||||||| ||||| ||||||||| ||||||| ||||||||||||||    
T  224 aattgaattgatttaatatttcaaatattagataattatgaatgaata 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 18918811 - 18918722
Alignment:
Q  87 tatttttataaattaaaattgaattaatttagtatttcaaaaattagatgattatgaatgaatagataaattattgattaaatttaatgat 177  Q
    ||||||||||| ||| |||| ||||| || | ||||| |||| ||| || ||||||||| |||| ||||||||||| | ||||||||||||    
T  18918811 tatttttataatttataattaaattacttcaatattttaaaa-ttatataattatgaataaatatataaattattgttaaaatttaatgat 18918722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University